Notable changes:
-
New feature: added option -T to specify a non-standard NCBI translation
table (#56 and #57). As this is an indexing option, the binary index format
has to be changed accordingly. Miniprot will reject indices built with
previous versions. -
Improvement: properly handle reference deletions involving in-frame stop
codons (#58). Older versions would not penalize these stop codons. This
change also improves junction accuracy especially for distant homologs. -
Bugfix: in the GFF3 output, CDS now includes stop codons (#55). Note the in
GTF, CDS excludes stop codons. -
Bugfix: suppress an extra amino acid in the --trans or --aln output (#47).
In rare cases, this may lead to memory violation.
(0.13: 6 March 2024, r248)