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Improve resume suggestions #3719
Improve resume suggestions #3719
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- if dataset (or param) is persistent & shared, don't keep looking for ancestors - only look for ancestors producing impersistent inputs - minimize number of suggested nodes (= shorter message for the same pipeline) - testable logic, tests cases outside of scenarios for sequential runner Signed-off-by: Ondrej Zacha <[email protected]>
Signed-off-by: Ondrej Zacha <[email protected]>
Signed-off-by: Ondrej Zacha <[email protected]>
kedro/runner/runner.py
Outdated
def _nodes_with_external_inputs( | ||
pipeline: Pipeline, nodes_of_interest: Iterable[Node] | ||
) -> set[Node]: | ||
"""For given ``Node``s in a ``Pipeline``, find their | ||
subset which depends on external inputs of the ``Pipeline``. | ||
|
||
Args: | ||
pipeline: the ``Pipeline`` to search for direct parents in. | ||
child: the ``Node`` to find parents of. | ||
pipeline: the ``Pipeline`` to search for nodes in. | ||
nodes_of_interest: the ``Node``s to analyze. | ||
|
||
Returns: | ||
A list of all ``Node``s that are direct parents of ``child``. | ||
A set of ``Node``s that depend on external inputs | ||
of nodes of interest. | ||
|
||
""" | ||
parent_pipeline = pipeline.only_nodes_with_outputs(*child.inputs) | ||
return parent_pipeline.nodes | ||
p_nodes_of_interest = pipeline.only_nodes(*(n.name for n in nodes_of_interest)) | ||
p_nodes_with_external_inputs = p_nodes_of_interest.only_nodes_with_inputs( | ||
*p_nodes_of_interest.inputs() | ||
) | ||
return set(p_nodes_with_external_inputs.nodes) |
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The function name is _node_with_external_inputs
but its arguments is a list of node. If you are trying to search for pipeline node that has external_inputs, can you use pipeline.inputs
and then pipeline.only_nodes_with_inputs
?
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Good point, simplified that
kedro/runner/runner.py
Outdated
the run. | ||
|
||
""" | ||
all_nodes_that_need_to_run = find_all_required_nodes( |
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all_nodes_that_need_to_run = find_all_required_nodes( | |
nodes_to_be_run = find_all_required_nodes( |
?
kedro/runner/runner.py
Outdated
# Find which of the remaining nodes would need to run first (in topo sort) | ||
persistent_ancestors = find_initial_node_group(pipeline, all_nodes_that_need_to_run) |
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Is this needed for "Number of suggested nodes to re-run from is minimised (-> shorter message for the same pipeline)" this?
kedro/runner/runner.py
Outdated
# Find which of the remaining nodes would need to run first (in topo sort) | ||
persistent_ancestors = _find_initial_node_group( | ||
pipeline, all_nodes_that_need_to_run | ||
) |
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I find this a bit hard to understand the purpose of this, is it similar to this?
p = pipeline(all_nodes_tht_need_to_run)
p_inputs = p.inputs()
input_nodes = p.only_nodes_with_input(p_inputs)
input_nodes_names = [n.name for n in input_nodes]
It's just pseudocode so I don't guarantee it works
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This is not exactly the same. The difference appears when nodes share the same external inputs:
Pipeline([
node(
name="first_node",
func=...,
inputs=["external_input"],
outputs="intermediate_output",
),
node(
name="second_node",
func=...,
inputs=["external_input", "intermediate_output"],
outputs="final_output",
)
])
Your suggestion would produce ["first_node", "second_node"]
here, whereas with the topo sort group approach, only the ["first_node"]
is produced (as this pipeline will have two topo sort groups, each containing a single node).
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I left some comments, and manually tested and it works well.
I have some concerns to open up a lot of public methods which is unclear to me how will it be useful outside of this context (Maybe for using it in notebook? Would love to see some example of this if that's the case)
Signed-off-by: Ondrej Zacha <[email protected]>
Sure, I don't have a strong preference here. In my work I've found myself pulling these methods out of the runner code to figure out how to continue a run of a pipeline which did not fail gracefully (ran into an OOM error and never showed this suggestion) – but I can imagine that can very much be an exception |
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Thanks for this improved PR @ondrejzacha ! 🙂 On first review, things look generally good to me. I've left a couple of clarification questions.
The tests look good as well, but I agree with your comment on moving it to a separate test file. The last set of tests aren't actually using any specific runner so it might confuse others coming across them to understand whether this is SequentialRunner
specific or not.
- Use _EPHEMERAL attribute - Move tests to separate file - Docstring updates Signed-off-by: Ondrej Zacha <[email protected]>
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Thanks for making all the changes and it is taking so long. This is a great improvement and it's one step closer to rerunning pipeline in an efficient way.
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Thank you, @ondrejzacha , for the significant update to the resume suggestions algorithm and the development of high-quality tests! It's fantastic that the suggestions are now effectively minimised, excluding nodes that have already been successfully processed. I've left some minor comments, but overall, the PR looks great to me!
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Thanks for addressing my comments and this contribution @ondrejzacha ⭐ ⭐
Would you mind updating the release notes with this change as well and adding your name under the contributors section: https://github.com/kedro-org/kedro/blob/main/RELEASE.md#community-contributions ?
…tions-2 Signed-off-by: Ondrej Zacha <[email protected]>
Signed-off-by: Ondrej Zacha <[email protected]>
Signed-off-by: Ondrej Zacha <[email protected]>
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Thank you for addressing comments, @ondrejzacha !
Signed-off-by: Ondrej Zacha <[email protected]>
I think from my side this is ready; the docs build is still failing so let me know if there's anything I can still do. Excited to see this merged, thanks for the reviews! 🤩 |
@ondrejzacha amazing, thanks again really appreciate the effort🙏 I will take over and merge this. |
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Thank you for responding to the comments, @ondrejzacha. Fantastic work on the PR!
Signed-off-by: Nok Lam Chan <[email protected]>
* Improve suggestions to resume a failed pipeline - if dataset (or param) is persistent & shared, don't keep looking for ancestors - only look for ancestors producing impersistent inputs - minimize number of suggested nodes (= shorter message for the same pipeline) - testable logic, tests cases outside of scenarios for sequential runner - Use _EPHEMERAL attribute - Move tests to separate file - Docstring updates --------- Signed-off-by: Ondrej Zacha <[email protected]> Co-authored-by: Nok Lam Chan <[email protected]>
* Improve suggestions to resume a failed pipeline - if dataset (or param) is persistent & shared, don't keep looking for ancestors - only look for ancestors producing impersistent inputs - minimize number of suggested nodes (= shorter message for the same pipeline) - testable logic, tests cases outside of scenarios for sequential runner - Use _EPHEMERAL attribute - Move tests to separate file - Docstring updates --------- Signed-off-by: Ondrej Zacha <[email protected]> Co-authored-by: Nok Lam Chan <[email protected]> Signed-off-by: Ahdra Merali <[email protected]>
) * Update kedro-catalog-0.19.json (#3724) * Update kedro-catalog-0.19.json Signed-off-by: Anthony De Bortoli <[email protected]> * Update set_up_vscode.md Signed-off-by: Anthony De Bortoli <[email protected]> --------- Signed-off-by: Anthony De Bortoli <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Update project tests directory structure in docs Signed-off-by: Ahdra Merali <[email protected]> * Add docs on writing tests Signed-off-by: Ahdra Merali <[email protected]> * Drop dependency on toposort in favour of built-in graphlib (#3728) * Replace toposort with graphlib (built-in from Python 3.9) Signed-off-by: Ivan Danov <[email protected]> * Create toposort groups only when needed Signed-off-by: Ivan Danov <[email protected]> * Update RELEASE.md and graphlib version constraints Signed-off-by: Ivan Danov <[email protected]> * Remove mypy-toposort Signed-off-by: Ivan Danov <[email protected]> * Ensure that the suggest resume test has no node ordering requirement Signed-off-by: Ivan Danov <[email protected]> * Ensure stable toposorting by grouping and ungrouping the result Signed-off-by: Ivan Danov <[email protected]> --------- Signed-off-by: Ivan Danov <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Optimise pipeline addition and creation (#3730) * Create toposort groups only when needed * Ensure that the suggest resume test has no node ordering requirement * Ensure stable toposorting by grouping and ungrouping the result * Delay toposorting until pipeline.nodes is used * Avoid using .nodes when topological order or new copy is unneeded * Copy the nodes only if tags are provided * Remove unnecessary condition in self.nodes Signed-off-by: Ivan Danov <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Expand robots.txt for Kedro-Viz and Kedro-Datasets docs (#3729) * Add project to robots.txt Signed-off-by: Dmitry Sorokin <[email protected]> * Add EOF Signed-off-by: Dmitry Sorokin <[email protected]> --------- Signed-off-by: Dmitry Sorokin <[email protected]> Co-authored-by: Juan Luis Cano Rodríguez <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Kedro need more uv (#3740) * Kedro need more uv Signed-off-by: Nok <[email protected]> * remove docker Signed-off-by: Nok <[email protected]> --------- Signed-off-by: Nok <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Resolve all path in Kedro (#3742) * Kedro need more uv Signed-off-by: Nok <[email protected]> * remove docker Signed-off-by: Nok <[email protected]> * fix broken type hint and resolve project path Signed-off-by: Nok Lam Chan <[email protected]> * fix type hint Signed-off-by: Nok Lam Chan <[email protected]> * remove duplicate logic Signed-off-by: Nok Lam Chan <[email protected]> * adding nok.py is definitely an accident Signed-off-by: Nok Lam Chan <[email protected]> * fix test Signed-off-by: Nok Lam Chan <[email protected]> * remove print Signed-off-by: Nok Lam Chan <[email protected]> * add test Signed-off-by: Nok <[email protected]> --------- Signed-off-by: Nok <[email protected]> Signed-off-by: Nok Lam Chan <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Remove settings of rate limits and retries (#3769) * double linkcheck limits Signed-off-by: Nok Lam Chan <[email protected]> * fix ratelimit Signed-off-by: Nok <[email protected]> --------- Signed-off-by: Nok Lam Chan <[email protected]> Signed-off-by: Nok <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Improve resume suggestions (#3719) * Improve suggestions to resume a failed pipeline - if dataset (or param) is persistent & shared, don't keep looking for ancestors - only look for ancestors producing impersistent inputs - minimize number of suggested nodes (= shorter message for the same pipeline) - testable logic, tests cases outside of scenarios for sequential runner - Use _EPHEMERAL attribute - Move tests to separate file - Docstring updates --------- Signed-off-by: Ondrej Zacha <[email protected]> Co-authored-by: Nok Lam Chan <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Build docs fix (#3773) * Ignored forbidden url Signed-off-by: Elena Khaustova <[email protected]> * Returned linkscheck retries Signed-off-by: Elena Khaustova <[email protected]> * Removed odd comment Signed-off-by: Elena Khaustova <[email protected]> --------- Signed-off-by: Elena Khaustova <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Clarify docs around custom resolvers (#3759) * Updated custom resolver docs section Signed-off-by: Elena Khaustova <[email protected]> * Updated advanced configuration section for consistency Signed-off-by: Elena Khaustova <[email protected]> * Updated RELEASE.md Signed-off-by: Elena Khaustova <[email protected]> * Updated RELEASE.md Signed-off-by: Elena Khaustova <[email protected]> * Test linkcheck_workers decrease Signed-off-by: Elena Khaustova <[email protected]> * Increased the By default, the linkcheck_rate_limit_timeout to default Signed-off-by: Elena Khaustova <[email protected]> * Returned old docs build settings Signed-off-by: Elena Khaustova <[email protected]> * Fixed typo Signed-off-by: Elena Khaustova <[email protected]> * Ignore forbidden url Signed-off-by: Elena Khaustova <[email protected]> * Returned linkcheck retries Signed-off-by: Elena Khaustova <[email protected]> --------- Signed-off-by: Elena Khaustova <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Add mlruns to gitignore to avoid pushing mlflow local runs to github (#3765) * Add mlruns to gitignore to avoid pushing mlflow local runs to github Signed-off-by: Yolan Honoré-Rougé <[email protected]> * update release.md Signed-off-by: Yolan Honoré-Rougé <[email protected]> --------- Signed-off-by: Yolan Honoré-Rougé <[email protected]> Signed-off-by: Merel Theisen <[email protected]> Co-authored-by: Merel Theisen <[email protected]> Co-authored-by: Nok Lam Chan <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Update the dependencies page in the docs (#3772) * Update the dependencies page Signed-off-by: Ankita Katiyar <[email protected]> * Update docs/source/kedro_project_setup/dependencies.md Signed-off-by: Ankita Katiyar <[email protected]> * Apply suggestions from code review Co-authored-by: Jo Stichbury <[email protected]> Signed-off-by: Ankita Katiyar <[email protected]> * Fix lint Signed-off-by: Ankita Katiyar <[email protected]> * Move the last line to notes Signed-off-by: Ankita Katiyar <[email protected]> --------- Signed-off-by: Ankita Katiyar <[email protected]> Signed-off-by: Ankita Katiyar <[email protected]> Co-authored-by: Jo Stichbury <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Change pipeline test location to project root/tests (#3731) * Change pipeline test location to project root/tests Signed-off-by: lrcouto <[email protected]> * Fix some test_pipeline tests Signed-off-by: lrcouto <[email protected]> * Change delete pipeline to account for new structure Signed-off-by: lrcouto <[email protected]> * Fix some tests Signed-off-by: lrcouto <[email protected]> * Change tests path on micropkg Signed-off-by: lrcouto <[email protected]> * Fix remaining tests Signed-off-by: lrcouto <[email protected]> * Add changes to release notes Signed-off-by: lrcouto <[email protected]> * Update file structure on micropackaging doc page Signed-off-by: lrcouto <[email protected]> --------- Signed-off-by: lrcouto <[email protected]> Signed-off-by: L. R. Couto <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Add an option for kedro new to skip telemetry (#3701) * First draft for telemetry consent flag on kedro new Signed-off-by: lrcouto <[email protected]> * Add functioning --telemetry option to kedro new Signed-off-by: lrcouto <[email protected]> * Update tests to acknowledge new flag Signed-off-by: lrcouto <[email protected]> * Add tests for kedro new --telemetry flag Signed-off-by: lrcouto <[email protected]> * Add changes to documentation and release notes Signed-off-by: lrcouto <[email protected]> * Minor change to docs Signed-off-by: lrcouto <[email protected]> * Lint Signed-off-by: lrcouto <[email protected]> * Remove outdated comment and correct type hint Signed-off-by: lrcouto <[email protected]> * Update docs/source/get_started/new_project.md Co-authored-by: Merel Theisen <[email protected]> Signed-off-by: L. R. Couto <[email protected]> * Lint Signed-off-by: lrcouto <[email protected]> * Minor change on release note Signed-off-by: lrcouto <[email protected]> --------- Signed-off-by: lrcouto <[email protected]> Signed-off-by: L. R. Couto <[email protected]> Co-authored-by: Merel Theisen <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Update documentation for OmegaConfigLoader (#3778) * Update documentation for OmegaConfigLoader Signed-off-by: Puneet Saini <[email protected]> * Update RELEASE.md Signed-off-by: Puneet Saini <[email protected]> * Update RELEASE.md Signed-off-by: Puneet Saini <[email protected]> * Update ignore-names.txt Signed-off-by: Juan Luis Cano Rodríguez <[email protected]> --------- Signed-off-by: Puneet Saini <[email protected]> Signed-off-by: Juan Luis Cano Rodríguez <[email protected]> Co-authored-by: Juan Luis Cano Rodríguez <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Fix path Signed-off-by: Ahdra Merali <[email protected]> * Lint Signed-off-by: Ahdra Merali <[email protected]> * Add changes to RELEASE.md Signed-off-by: Ahdra Merali <[email protected]> * Address comments from code review Signed-off-by: Ahdra Merali <[email protected]> * Empty Signed-off-by: Juan Luis Cano Rodríguez <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Remove unneeded imports Signed-off-by: Ahdra Merali <[email protected]> * Change recommendation from pytest config to editable install Signed-off-by: Ahdra Merali <[email protected]> * Add negative testing example Signed-off-by: Ahdra Merali <[email protected]> * Replace Dict with dict Signed-off-by: Ahdra Merali <[email protected]> * Remove test classes Signed-off-by: Ahdra Merali <[email protected]> * Change the assert step for the integration test Signed-off-by: Ahdra Merali <[email protected]> * Fix error handling for OmegaConfigLoader (#3784) * Update omegaconf_config.py Signed-off-by: Puneet Saini <[email protected]> * Update RELEASE.md Signed-off-by: Puneet Saini <[email protected]> * add a more complicated test case Signed-off-by: Nok <[email protected]> --------- Signed-off-by: Puneet Saini <[email protected]> Signed-off-by: Nok <[email protected]> Co-authored-by: Nok <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Add Simon Brugman to TSC (#3780) Signed-off-by: Juan Luis Cano Rodríguez <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Update technical_steering_committee.md (#3796) Signed-off-by: Marcin Zabłocki <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Remove jmespath dependency (#3797) Signed-off-by: Merel Theisen <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Update spaceflights tutorial and starter requirements for kedro-datasets optional dependencies (#3664) * Update spaceflights tutorial and starter requirements Signed-off-by: lrcouto <[email protected]> * fix e2e tests Signed-off-by: lrcouto <[email protected]> * Fix e2e tests by distinguishing `kedro-datasets` dependency for different python versions (#3802) Signed-off-by: Merel Theisen <[email protected]> * Update docs/source/tutorial/tutorial_template.md Co-authored-by: Merel Theisen <[email protected]> Signed-off-by: L. R. Couto <[email protected]> --------- Signed-off-by: lrcouto <[email protected]> Signed-off-by: L. R. Couto <[email protected]> Signed-off-by: Merel Theisen <[email protected]> Co-authored-by: Merel Theisen <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Consider Vale's suggestions Signed-off-by: Ahdra Merali <[email protected]> * Hide test in details Signed-off-by: Ahdra Merali <[email protected]> * Quick fix Signed-off-by: Ahdra Merali <[email protected]> * Typo (and wording changes) Signed-off-by: Ahdra Merali <[email protected]> * Update robots.txt (#3803) Signed-off-by: Ankita Katiyar <[email protected]> Co-authored-by: Juan Luis Cano Rodríguez <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Add a test for transcoding loops of 1 or more nodes (#3810) Signed-off-by: Ivan Danov <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Ensure no nodes can depend on themselves even when transcoding is used (#3812) * Factor out transcoding helpers into a private module Signed-off-by: Ivan Danov <[email protected]> * Ensure node input/output validation doesn't allow transcoded self-loops Signed-off-by: Ivan Danov <[email protected]> * Updated release note to avoid github warning Signed-off-by: Elena Khaustova <[email protected]> --------- Signed-off-by: Ivan Danov <[email protected]> Signed-off-by: Elena Khaustova <[email protected]> Co-authored-by: Elena Khaustova <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Update UUID telemetry docs (#3805) Signed-off-by: Dmitry Sorokin <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Change path to starters test (#3816) Signed-off-by: lrcouto <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> * Move changes in RELEASE.md to docs section Signed-off-by: Ahdra Merali <[email protected]> * Change formatting Signed-off-by: Ahdra Merali <[email protected]> * Revert "Change formatting" This reverts commit 9582a22. Signed-off-by: Ahdra Merali <[email protected]> * Apply changes from code review Signed-off-by: Ahdra Merali <[email protected]> * Add explanation on why cleanup isn't needed Signed-off-by: Ahdra Merali <[email protected]> * Change assert on successful pipeline to check logs Signed-off-by: Ahdra Merali <[email protected]> * Update description of integration test under pipeline slicing Signed-off-by: Ahdra Merali <[email protected]> * Missing formatting Signed-off-by: Ahdra Merali <[email protected]> * Update tests directory structure Signed-off-by: Ahdra Merali <[email protected]> --------- Signed-off-by: Anthony De Bortoli <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> Signed-off-by: Ivan Danov <[email protected]> Signed-off-by: Dmitry Sorokin <[email protected]> Signed-off-by: Nok <[email protected]> Signed-off-by: Nok Lam Chan <[email protected]> Signed-off-by: Ondrej Zacha <[email protected]> Signed-off-by: Elena Khaustova <[email protected]> Signed-off-by: Yolan Honoré-Rougé <[email protected]> Signed-off-by: Merel Theisen <[email protected]> Signed-off-by: Ankita Katiyar <[email protected]> Signed-off-by: Ankita Katiyar <[email protected]> Signed-off-by: lrcouto <[email protected]> Signed-off-by: L. R. Couto <[email protected]> Signed-off-by: Puneet Saini <[email protected]> Signed-off-by: Juan Luis Cano Rodríguez <[email protected]> Signed-off-by: Marcin Zabłocki <[email protected]> Signed-off-by: Merel Theisen <[email protected]> Signed-off-by: Ahdra Merali <[email protected]> Co-authored-by: Anthony De Bortoli <[email protected]> Co-authored-by: Ivan Danov <[email protected]> Co-authored-by: Dmitry Sorokin <[email protected]> Co-authored-by: Juan Luis Cano Rodríguez <[email protected]> Co-authored-by: Nok Lam Chan <[email protected]> Co-authored-by: Ondrej Zacha <[email protected]> Co-authored-by: ElenaKhaustova <[email protected]> Co-authored-by: Yolan Honoré-Rougé <[email protected]> Co-authored-by: Merel Theisen <[email protected]> Co-authored-by: Ankita Katiyar <[email protected]> Co-authored-by: Jo Stichbury <[email protected]> Co-authored-by: L. R. Couto <[email protected]> Co-authored-by: Puneet Saini <[email protected]> Co-authored-by: Marcin Zabłocki <[email protected]> Co-authored-by: Elena Khaustova <[email protected]>
Description
Supersedes #3026
Addresses #3002:
Additionally:
Development notes
Additional tests added in
test_sequential_runner.py
– both to check the message in logs for sequential runner specifically, as well as a new suite of tests for the suggestion logic itself. I appreciate that the logic is not exactly straightforward, so please double check the tests / let me know if more tests are needed.Developer Certificate of Origin
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Signed-off-by
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Checklist
RELEASE.md
file