fix: renamed momicsquery to query #159
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| name: Test & Doc | |
| on: | |
| push: | |
| branches: [ devel ] | |
| pull_request: | |
| branches: [ devel ] | |
| permissions: | |
| contents: write | |
| jobs: | |
| Test: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [ "3.8", "3.9", "3.10", "3.11", "3.12" ] | |
| include: | |
| - os: ubuntu-latest | |
| # - os: windows-latest | |
| # - os: macos-latest | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| GCS_CREDS_PASSPHRASE: ${{ secrets.GCS_CREDS_PASSPHRASE }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install package and dependencies on ${{ matrix.os }} | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev] | |
| - name: Decrypt GCS credentials file | |
| run: | | |
| gpg --batch --yes --quiet --passphrase "${{ env.GCS_CREDS_PASSPHRASE }}" --decrypt --output gcs_creds.json .gcs_creds.json.gpg | |
| - name: Run tests on ${{ matrix.os }} | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AZURE_STORAGE_ACCOUNT_KEY: ${{ secrets.AZURE_STORAGE_ACCOUNT_KEY }} | |
| run: | | |
| ruff check . --select=E9,F63,F7,F82 | |
| pytest --cov --cov-report=xml | |
| - name: Cleanup gcs_creds.json | |
| if: always() | |
| run: | | |
| rm -f gcs_creds.json | |
| - name: Upload results to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| Doc: | |
| runs-on: ubuntu-latest | |
| needs: Test | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Install pandoc (required for doc generation) | |
| uses: pandoc/actions/setup@v1 | |
| - name: Buid Sphinx doc | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/devel' }} | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e .[dev,docs] | |
| make -C docs html | |
| - name: Deploy to GitHub Pages | |
| uses: peaceiris/actions-gh-pages@v4 | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/devel' }} | |
| with: | |
| publish_branch: gh-pages | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: docs/build/html | |
| force_orphan: true |