fix: renamed momicsquery to query

js2264 · Oct 24, 2024 · c6b68e2 · c6b68e2
1 parent 02306bd
commit c6b68e2
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Showing 9 changed files with 10 additions and 10 deletions.
diff --git a/src/momics/__init__.py b/src/momics/__init__.py
@@ -10,15 +10,15 @@
 """
 
 from . import momics
-from . import momicsquery
+from . import query
 from . import streamer
 from . import config
 from . import utils
 from .version import __format_version__, __version__
 
 __all__ = [
     "momics",
-    "momicsquery",
+    "query",
     "streamer",
     "config",
     "utils",

diff --git a/src/momics/cli/query.py b/src/momics/cli/query.py
@@ -3,7 +3,7 @@
 from Bio import SeqIO
 import pyranges as pr
 
-from momics.momicsquery import MomicsQuery
+from momics.query import MomicsQuery
 
 from .. import momics
 from .. import utils

diff --git a/src/momics/momicsquery.py → src/momics/query.py b/src/momics/momicsquery.py → src/momics/query.py
diff --git a/src/momics/streamer.py b/src/momics/streamer.py
@@ -6,7 +6,7 @@
 
 from .momics import Momics
 from .logging import logger
-from .momicsquery import MomicsQuery
+from .query import MomicsQuery
 
 
 class MomicsStreamer:

diff --git a/tests/test_cli.py b/tests/test_cli.py
@@ -9,7 +9,7 @@
 from momics.cli import cli
 from momics import utils
 from momics.momics import Momics
-from momics import momicsquery
+from momics import query
 
 
 @pytest.fixture
@@ -138,7 +138,7 @@ def test_cp_track(runner, path, bw3):
     assert os.path.exists("out.bw")
     mom = Momics(path)
     bed = pr.from_dict({"Chromosome": ["I", "I"], "Start": [990, 1990], "End": [1010, 2010]})
-    q = momicsquery.MomicsQuery(mom, bed).query_tracks()
+    q = query.MomicsQuery(mom, bed).query_tracks()
 
     # pybigwig version
     res = {"bw2": collections.defaultdict(list)}

diff --git a/tests/test_cloud.py b/tests/test_cloud.py
@@ -9,7 +9,7 @@
 
 from momics import momics
 from momics import config, logging, utils
-from momics.momicsquery import MomicsQuery
+from momics.query import MomicsQuery
 
 dotenv.load_dotenv()
 

diff --git a/tests/test_momics.py b/tests/test_momics.py
@@ -8,7 +8,7 @@
 
 from momics import momics
 from momics import utils
-from momics.momicsquery import MomicsQuery
+from momics.query import MomicsQuery
 
 
 @pytest.mark.order(1)

diff --git a/tests/test_momics_vs_pybigwig.py b/tests/test_momics_vs_pybigwig.py
@@ -4,7 +4,7 @@
 import pyBigWig
 
 from momics import momics
-from momics.momicsquery import MomicsQuery
+from momics.query import MomicsQuery
 
 
 @pytest.mark.order(1)

diff --git a/tests/test_momicsquery.py b/tests/test_momicsquery.py
@@ -11,7 +11,7 @@
 import pytest
 
 from momics.momics import Momics
-from momics.momicsquery import MomicsQuery
+from momics.query import MomicsQuery
 
 multiprocessing.set_start_method("spawn", force=True)