fix: biblio entries #201
Workflow file for this run
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| name: Docker image | |
| on: | |
| schedule: | |
| - cron: '0 1 1,16 * *' | |
| push: | |
| branches: | |
| - main | |
| env: | |
| registry: ghcr.io | |
| user: js2264 | |
| repository: ohca | |
| jobs: | |
| build-push: | |
| strategy: | |
| matrix: | |
| BIOC_VERSION: [devel, RELEASE_3_17] | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.BIOC_VERSION }} | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: π§Ύ Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: false | |
| - name: π Free Disk Space (Ubuntu) | |
| uses: jlumbroso/[email protected] | |
| - name: π Get current package version | |
| id: version | |
| run: | | |
| version=$(grep -m1 -E '^Version: +' DESCRIPTION | sed -E 's/.*: +//') | |
| - name: π Log in to the Container registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.PAT_GITHUB }} | |
| - name: π· Get metadata for Docker | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ghcr.io/js2264/ohca | |
| tags: | | |
| type=raw,value=latest,enable=true | |
| type=raw,value=${{ steps.version.outputs.version }},enable=true | |
| type=raw,value=bioc_${{ matrix.BIOC_VERSION }},enable=true | |
| - name: π· Build and push multi-arch Docker image | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| GITHUB_TOKEN: ${{ secrets.PAT_GITHUB }} | |
| platforms: linux/amd64 | |
| file: Dockerfile | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| outputs: type=image,annotation-index.org.opencontainers.image.description=OHCA | |
| build-args: | | |
| VERSION=${{ steps.version.outputs.version }} | |
| BIOC_VERSION=${{ matrix.BIOC_VERSION }} | |
| render-deploy: | |
| needs: build-push | |
| strategy: | |
| matrix: | |
| BIOC_VERSION: [devel] | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/js2264/ohca:bioc_${{ matrix.BIOC_VERSION }} | |
| steps: | |
| - name: π§Ύ Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: false | |
| - name: π Render OHCA book from versionized OHCA container | |
| run: | | |
| quarto install tinytex | |
| quarto render | |
| - name: π Install rsync | |
| run: | | |
| apt-get update && apt-get install -y rsync | |
| - name: π Deploy OHCA book to Github Pages on versionized branch | |
| uses: JamesIves/[email protected] | |
| with: | |
| folder: docs/ | |
| branch: bioc_${{ matrix.BIOC_VERSION }} | |
| clean: true |