fix: biblio entries

js2264 · Oct 30, 2023 · 099bc70 · 099bc70
1 parent e5a874a
commit 099bc70
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Showing 16 changed files with 31 additions and 1 deletion.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -39,6 +39,7 @@ Imports:
     sessioninfo 
 Remotes:
     github::TaoYang-dev/hicrep
+    github::js2264/plyinteractions
 biocViews:
     HiC,
     DNA3DStructure

diff --git a/_quarto.yml b/_quarto.yml
@@ -49,6 +49,7 @@ format:
     author-meta: "Jacques Serizay"
     highlight-style: atom-one-dark.theme
     citations-hover: true
+    citation-location: margin
     toc: true
     toc-float: 
       collapsed: false

diff --git a/data-representation.qmd b/data-representation.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/disseminating.qmd b/disseminating.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/interactions-centric.qmd b/interactions-centric.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/interoperability.qmd b/interoperability.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/matrix-centric.qmd b/matrix-centric.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/parsing.qmd b/parsing.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/preamble.qmd b/preamble.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/principles.qmd b/principles.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/topological-features.qmd b/topological-features.qmd
@@ -1,8 +1,10 @@
 ---
-reference-section-title: References
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 bibliography: bibliography.bib
 ---
 
+reference-section-title: References
 # Finding topological features in Hi-C 
 
 ```{r}

diff --git a/visualization.qmd b/visualization.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/workflow-centros.qmd b/workflow-centros.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/workflow-chicken.qmd b/workflow-chicken.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/workflow-multiomics.qmd b/workflow-multiomics.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---

diff --git a/workflow-yeast.qmd b/workflow-yeast.qmd
@@ -1,4 +1,6 @@
 ---
+filters:
+  - _extensions/pandoc-ext/section-bibliographies/section-bibliographies.lua
 reference-section-title: References
 bibliography: bibliography.bib
 ---