v0.0.29

What's Changed

• Juranic/add cosmx dirschema by @j-uranic in #1382
• J uranic/cosmx dirschema update by @j-uranic in #1383
• J uranic/dirschema updates by @j-uranic in #1384

Full Changelog: v0.0.28...v0.0.29

v0.0.28

What's Changed

• J uranic/xenium dirschema updates by @j-uranic in #1378
• Juranic/geomxngs dirschema update by @j-uranic in #1379
• Jpuerto/cosmx release by @jpuerto-psc in #1381

Full Changelog: v0.0.27...v0.0.28

v0.0.27

What's Changed

• Juranic/vwp dirschema updates by @j-uranic in #1368
• Juranic/segmasks dirschema fix by @j-uranic in #1369
• Testing updates by @gesinaphillips in #1364
• Remove deprecated code by @gesinaphillips in #1370
• Juranic/phenocycler dirschema update by @j-uranic in #1371
• Juranic/geomx dirschema fix by @j-uranic in #1372
• Upload: Use the path name rather than the full path when comparing to… by @jpuerto-psc in #1373
• Jpuerto/xenium release by @jpuerto-psc in #1375
• Juranic/xenium dirschema by @j-uranic in #1376
• Error reporting updates, error counting by @gesinaphillips in #1365
• Juranic/xenium dirschema by @jpuerto-psc in #1377

Full Changelog: v0.0.26...v0.0.27

v0.0.26

What's Changed

• Juranic/geomxngs dirschema update by @j-uranic in #1361
• Juranic/merfish dirschema fixes by @j-uranic in #1362
• Juranic/lcms dirschema updates by @j-uranic in #1363
• Juranic/visnoprobes dirschema fix by @j-uranic in #1366
• Juranic/vis dirschemas fixes by @j-uranic in #1367

Full Changelog: v0.0.25...v0.0.26

v0.0.25

What's Changed

• Juranic/geomx dirschema update by @j-uranic in #1359
• Juranic/geomx dirschema update by @jpuerto-psc in #1360
• Adding epic dataset unique field by @gesinaphillips in #1358

Full Changelog: v0.0.24...v0.0.25

v0.0.24

What's Changed

• General: Release MERFISH by @jpuerto-psc in #1344
• Jpuerto/merfish release by @jpuerto-psc in #1345
• Jpuerto/merfish release by @jpuerto-psc in #1346
• Juranic/merfish dirschema update by @j-uranic in #1347
• Juranic/merfish dirschema update by @j-uranic in #1349
• Juranic/add celldive dirschema by @j-uranic in #1353
• Juranic/mibi visium dirschema update by @j-uranic in #1352
• Juranic/add celldive dirschema by @jpuerto-psc in #1354
• Juranic/segmasks dirschema update by @j-uranic in #1350
• Juranic/visium dirschemas update by @j-uranic in #1356
• Juranic/visium dirschemas edits by @j-uranic in #1357
• testing HuBMAP constraints endpoint by @jpuerto-psc in #1355

Full Changelog: v0.0.23...v0.0.24

v0.0.23

What's Changed

• Add globus_token to get_assaytype_data by @gesinaphillips in #1343

Full Changelog: v0.0.22...v0.0.23

v0.0.22

What's Changed

• Upload.multi_parent logging fix by @gesinaphillips in #1340
• Juranic/visium dirschema updates by @j-uranic in #1341
• Juranic/visium dirschema updates by @jpuerto-psc in #1342

Full Changelog: v0.0.21...v0.0.22

v0.0.21

Development (#1337)

* Entity type constraints (#1330)

* work in progress on entity constraints querying

* basic logic sketched in

* fixing linting error

* very unfinished, need to review entity constraint endpoint documentation further

* architected, testing, definitely broken

* at least one existing test passing, need to run all + design new tests

* added testing

* still testing, lots of edge cases

* messy code, will tidy up

* removed unnecessary code

* fixing formatting errors

* putting enums where they belong

* forgot a file

* need to fix my linter

* made sample constraints work I hope

* working on tests

* fixed broken test

* removed testing from dataset file, hopefully fixed requirements-dev install

* testing fixing action

* second testing fixing actions

* changes to fixtures from assaytype endpoint; fixing globus_token mistake

* fixing malformed constraints endpoint query

* removing breakpoint

* fixing sample checking logic error

* removing breakpoint again

* fixing adding dataset sub_type to SchemaVersion.entity_type_info

* fixing the same query URL mistake in test file

* updating test output with line number changes

* General: Update changelog to reflect releases/versioning updates. (#1334)

Co-authored-by: Juan Puerto <=>

* Update to entity constraints error reporting (#1335)

* scaffolding for update to error reporting to use get_errors

* updated constraint checking to use _get_message

* fixing bugs

* missed some files

* row numbering changes from online testing

* fixing some enum referencing

* linting update

* updated validate_tsv.py for testing get_tsv_errors; fixed some issues with type enums

* sources do not need constraint checks

* Docs: Update CHANGELOG

* Revert "Update to entity constraints error reporting (#1335)"

This reverts commit f92146dfffb14269d23ef7e61f3a6e19b1909e19.

* Phillips/entity constraints errors (#1338)

* scaffolding for update to error reporting to use get_errors

* updated constraint checking to use _get_message

* fixing bugs

* missed some files

* row numbering changes from online testing

* fixing some enum referencing

* linting update

* updated validate_tsv.py for testing get_tsv_errors; fixed some issues with type enums

* sources do not need constraint checks

---------

Co-authored-by: Gesina Phillips <[email protected]>

* Plugin run reporting (#1336)

* Mods to handle signaling of whether work was done by plugins

* changed the way info is reported via get_info to allow plugin names to be returned

* fixing weird TODO

* changelog

* added test

* moved plugin test to manual testing

---------

Co-authored-by: Joel Welling <[email protected]>

---------

Co-authored-by: gesinaphillips <[email protected]>
Co-authored-by: Juan Puerto <=>
Co-authored-by: Gesina Phillips <[email protected]>
Co-authored-by: Joel Welling <[email protected]>

v0.0.20

What's Changed

• Entity type constraints (#1330) by @jpuerto-psc in #1333

Full Changelog: v0.0.19...v0.0.20