Juranic/vwp dirschema updates #1368
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Add lab_processed/transformations, lab_processed/transformations/ *.txt, and change raw/fastq/oligo/*.fastq.gz to raw/fastq/oligo/*_R*.fastq.gz
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Add lab_processed/transformations and lab_processed/transformations/ .txt; change raw/fastq/oligo/.fastq.gz to raw/fastq/oligo/_R.fastq.gz