Skip to content

Issues: h3abionet/TADA

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

31 Open 24 Closed
31 Open 24 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Update post-DADA2 plots for quantitative details and more direct comparison to pre-QC DSL2 Prioritize for DSL2 implementation enhancement New feature or request
#64 opened Feb 4, 2025 by cjfields
Allow propagation of denoising info through to merging output DSL2 Prioritize for DSL2 implementation good first issue Good for newcomers
#63 opened Feb 1, 2025 by cjfields
Add back custom tax ranks DSL2 Prioritize for DSL2 implementation good first issue Good for newcomers
#62 opened Feb 1, 2025 by cjfields
Add a stop step after merging + chimera detection DSL2 Prioritize for DSL2 implementation
#61 opened Jan 29, 2025 by cjfields
Screening sequences using Infernal or HMMER DSL2 Prioritize for DSL2 implementation
#60 opened Jan 26, 2025 by cjfields
Implement variable amplicon (ITS) subworkflow DSL2 Prioritize for DSL2 implementation
#59 opened Jan 26, 2025 by cjfields
Add priors support DSL2 Prioritize for DSL2 implementation
#58 opened Jan 26, 2025 by cjfields
1
Add phangorn DSL2 Prioritize for DSL2 implementation
#57 opened Jan 26, 2025 by cjfields
Add cutadapt as alternate trimming subworkflow DSL2 Prioritize for DSL2 implementation
#56 opened Jan 26, 2025 by cjfields
3 tasks
Switch Illumina test data DSL2 Prioritize for DSL2 implementation
#55 opened Jan 14, 2025 by cjfields
DECIPHER: Alignment larger than the maximum allowable size DSL2 Prioritize for DSL2 implementation
#54 opened Jan 13, 2025 by Charmy0619
4
Implement binned error model from DADA2 DSL2 Prioritize for DSL2 implementation
#53 opened Jan 7, 2025 by cjfields
1
Refactor trimming and filtering DSL2 Prioritize for DSL2 implementation
#49 opened Oct 28, 2024 by cjfields
1
PacBio initial read counts and cutadapt-based trimming details missing from read tracking bug Something isn't working DSL2 Prioritize for DSL2 implementation high priority Needs fixin'!
#48 opened Aug 23, 2024 by cjfields
Update fluidigm-run.py to include sample sheet for PacBio DSL2 Prioritize for DSL2 implementation
#47 opened Jul 18, 2024 by NeginValizadegan
1
Add options for priors DSL2 Prioritize for DSL2 implementation
#46 opened Jun 15, 2024 by cjfields
3
Address pooling when doing chimera detection DSL2 Prioritize for DSL2 implementation
#45 opened Jun 15, 2024 by cjfields
Initial trimming steps DSL2 Prioritize for DSL2 implementation
#44 opened Mar 11, 2024 by cjfields
4 tasks
v2
@cjfields
Initial QC steps DSL2 Prioritize for DSL2 implementation
#43 opened Mar 11, 2024 by cjfields
3 of 5 tasks
v2
DSL1 is no longer supported high priority Needs fixin'!
#41 opened Nov 9, 2023 by cjfields
Documentation cleanup
#40 opened Jun 19, 2023 by cjfields
1
Set up Dockstore
#39 opened Dec 22, 2022 by cjfields
1 of 4 tasks
@cjfields @ziyaadparker
1
Reorganizing output directories DSL2 Prioritize for DSL2 implementation
#35 opened Feb 28, 2022 by cjfields
1
Generation of large matrices and data frames takes forever
#34 opened Feb 14, 2022 by cjfields
2
Overall name changes DSL2 Prioritize for DSL2 implementation
#33 opened Jan 24, 2022 by cjfields
3
ProTip! Exclude everything labeled bug with -label:bug.