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Add cutadapt as alternate trimming subworkflow #56

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cjfields opened this issue Jan 26, 2025 · 0 comments
Open
3 tasks

Add cutadapt as alternate trimming subworkflow #56

cjfields opened this issue Jan 26, 2025 · 0 comments
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DSL2 Prioritize for DSL2 implementation

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@cjfields
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cjfields commented Jan 26, 2025

This is largely in place for both Illumina and PacBio on a branch of main, though it needs testing. In relation to this, we also have cutadapt-based metrics included in read tracking there which will be useful here.

  • Implement cutadapt trimming
  • Add read tracking
  • Add simple tests
@cjfields cjfields added this to TADA v2 Jan 26, 2025
@cjfields cjfields converted this from a draft issue Jan 26, 2025
@cjfields cjfields added the DSL2 Prioritize for DSL2 implementation label Feb 4, 2025
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Labels
DSL2 Prioritize for DSL2 implementation
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Status: Todo
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