Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bug : Fix date indexing #439

Merged
merged 8 commits into from
Apr 19, 2021
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ import org.hl7.fhir.r4.model.ResourceType
@Entity(
indices =
[
Index(value = ["resourceType", "index_name", "index_tsHigh", "index_tsLow"]),
Index(value = ["resourceType", "index_name", "index_from", "index_to"]),
Index(
// keep this index for faster foreign lookup
value = ["resourceId", "resourceType"]
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -98,9 +98,8 @@ internal object ResourceIndexer {
DateIndex(
name = "_lastUpdated",
path = arrayOf(resource.fhirType(), "meta", "lastUpdated").joinToString(separator = "."),
tsHigh = lastUpdatedElement.value.time,
tsLow = lastUpdatedElement.value.time,
temporalPrecision = lastUpdatedElement.precision
from = lastUpdatedElement.value.time,
to = lastUpdatedElement.precision.add(lastUpdatedElement.value, 1).time
)
)
}
Expand All @@ -124,8 +123,7 @@ internal object ResourceIndexer {
searchParam.name,
searchParam.path,
date.value.time,
date.value.time,
date.precision
date.precision.add(date.value, 1).time
)
}
"dateTime" -> {
Expand All @@ -134,44 +132,31 @@ internal object ResourceIndexer {
searchParam.name,
searchParam.path,
dateTime.value.time,
dateTime.value.time,
dateTime.precision
dateTime.precision.add(dateTime.value, 1).time
)
}
// No need to add precision because an instant is meant to have zero width
"instant" -> {
val instant = value as InstantType
DateIndex(
searchParam.name,
searchParam.path,
instant.value.time,
instant.value.time,
instant.precision
)
DateIndex(searchParam.name, searchParam.path, instant.value.time, instant.value.time)
}
"Period" -> {
val period = value as Period
DateIndex(
searchParam.name,
searchParam.path,
if (period.hasEnd()) period.end.time else Long.MAX_VALUE,
if (period.hasStart()) period.start.time else Long.MIN_VALUE,
when {
(period.hasEnd() and period.hasStart()) ->
maxOf(period.startElement.precision, period.endElement.precision)
(period.hasEnd()) -> period.endElement.precision
(period.hasStart()) -> period.startElement.precision
else -> DateTimeType.DEFAULT_PRECISION
}
if (period.hasStart()) period.start.time else 0,
if (period.hasEnd()) period.endElement.precision.add(period.end, 1).time
else Long.MAX_VALUE
)
}
"Timing" -> {
val timing = value as Timing
DateIndex(
searchParam.name,
searchParam.path,
timing.event.maxOf { it.value.time },
timing.event.minOf { it.value.time },
timing.event.maxOf { it.precision }
timing.event.maxOf { it.precision.add(it.value, 1).time }
)
}
else -> null
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,6 @@

package com.google.android.fhir.index.entities

import ca.uhn.fhir.model.api.TemporalPrecisionEnum

/**
* An index record for a date value in a resource.
*
Expand All @@ -28,13 +26,14 @@ internal data class DateIndex(
val name: String,
/** The path of the date index, e.g. "Patient.birthdate". */
val path: String,
/** The high timestamp. */
val tsHigh: Long,
/** The low timestamp. */
val tsLow: Long,
/**
* The smallest value we can unambiguously resolve the date to. This is an indication to clients
* that any part of the timestamp smaller than the [temporalPrecision] should be ignored.
* The lower bound or start time of the date value. This is a closed interval and the value is
* included
*/
val from: Long,
/**
* The upper bound or end time of the date value. This is an open interval and the value is
* excluded
*/
val temporalPrecision: TemporalPrecisionEnum
val to: Long
)
Original file line number Diff line number Diff line change
Expand Up @@ -218,9 +218,8 @@ class ResourceIndexerTest {
DateIndex(
"date",
"Observation.effective",
periodElement.end.time,
periodElement.start.time,
periodElement.startElement.precision
periodElement.endElement.precision.add(periodElement.end, 1).time
)
)
}
Expand All @@ -235,8 +234,7 @@ class ResourceIndexerTest {
"date",
"Observation.effective",
dateTimeTypeElement.value.time,
dateTimeTypeElement.value.time,
dateTimeTypeElement.precision
dateTimeTypeElement.precision.add(dateTimeTypeElement.value, 1).time
)
)
}
Expand All @@ -250,9 +248,8 @@ class ResourceIndexerTest {
DateIndex(
"date",
"Observation.effective",
timingElement.event.maxOf { it.value.time },
timingElement.event.minOf { it.value.time },
timingElement.event.maxOf { it.precision }
timingElement.event.maxOf { it.precision.add(it.value, 1).time }
)
)
}
Expand All @@ -266,8 +263,7 @@ class ResourceIndexerTest {
"date",
"Observation.effective",
instantElement.value.time,
instantElement.value.time,
instantElement.precision
instantElement.value.time
)
)
}
Expand Down Expand Up @@ -333,9 +329,8 @@ class ResourceIndexerTest {
DateIndex(
"birthdate",
"Patient.birthDate",
birthDateElement.getValue().getTime(),
birthDateElement.getValue().getTime(),
birthDateElement.getPrecision()
birthDateElement.value.time,
birthDateElement.precision.add(birthDateElement.value, 1).time
)
)
}
Expand All @@ -350,8 +345,7 @@ class ResourceIndexerTest {
"_lastUpdated",
"Patient.meta.lastUpdated",
lastUpdatedElement.getValue().getTime(),
lastUpdatedElement.getValue().getTime(),
lastUpdatedElement.getPrecision()
lastUpdatedElement.precision.add(lastUpdatedElement.getValue(), 1).time
)
)
}
Expand Down