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Add .qmd to RMarkdown extensions #5518

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merged 4 commits into from
Mar 24, 2022
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@jjallaire jjallaire commented Aug 14, 2021

Description

The quarto markdown system (derivative of pandoc, see https://quarto.org/) uses .qmd files for markdown. This is analogous to how R Markdown uses .rmd -- these files are run for computations and produce an .md file.

Checklist:

  • I am associating a language with a new file extension.
    • The new extension is used in hundreds of repositories on GitHub.com
    • I have included a real-world usage sample for all extensions added in this PR:
    • I have included a change to the heuristics to distinguish my language from others using the same extension.

The quarto markdown system (derivative of pandoc, see https://quarto.org/) uses .qmd files for markdown. This is analagous to how R Markdown uses .rmd -- these files are run for computations and produce an .md file.

There is already an RMarkdown language mode in languages.yml which I could alternately add this to, but since that one is essentially also aliasing markdown and .qmd isn't actually R Markdown I thought it better to add it as a markdown file extension.
@jjallaire jjallaire requested a review from a team as a code owner August 14, 2021 22:36
@jjallaire jjallaire changed the title Map .qmd files to markdown syntax highlighting Map .qmd files to .rmd syntax highlighting Aug 15, 2021
@Alhadis
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Alhadis commented Aug 15, 2021

Unfortunately, there doesn't appear to be adequate usage yet. Of the ~641 .qmd files indexed on GitHub, there appear to be fewer than 50 users using this extension, which falls short of the “200+ repositories” criteria.

Mostly-complete search results:

63 repositories:
https://raw.githubusercontent.com/aocalderon/RIDIR
https://raw.githubusercontent.com/apreshill/r3-cloud
https://raw.githubusercontent.com/arvindgoyal84/gitpersonal
https://raw.githubusercontent.com/belivey/geo-admin
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs
https://raw.githubusercontent.com/cscheid/quarto-explainers
https://raw.githubusercontent.com/eoinomahony/1906_railways
https://raw.githubusercontent.com/erick2307/mizu-kenshu
https://raw.githubusercontent.com/fgianoli/estateGIS
https://raw.githubusercontent.com/fsdias/blog_data
https://raw.githubusercontent.com/G4te-Keep3r/HowdyHackers
https://raw.githubusercontent.com/guillermodangelo/polygon_grid
https://raw.githubusercontent.com/haideechu/nypd-traffic-arrests
https://raw.githubusercontent.com/hbrega/sf1952
https://raw.githubusercontent.com/hbrega/SF2_South_America
https://raw.githubusercontent.com/iliasrg/Projet
https://raw.githubusercontent.com/javimarlop/eHabpy
https://raw.githubusercontent.com/jiahui890/viz_project
https://raw.githubusercontent.com/jjallaire/airline-success
https://raw.githubusercontent.com/journalovi/jovi-template-quarto
https://raw.githubusercontent.com/journalovi/jovi-website-quarto
https://raw.githubusercontent.com/kartoza/fbf-project
https://raw.githubusercontent.com/m2cci-emilie-sirot/stageEmilie
https://raw.githubusercontent.com/maps4u/maps4u.github.io
https://raw.githubusercontent.com/martinyan/MC-repo
https://raw.githubusercontent.com/matias-harari/Tarea-Herramientas
https://raw.githubusercontent.com/matthew-brett/noteout
https://raw.githubusercontent.com/matthew-brett/qbt
https://raw.githubusercontent.com/matthew-brett/quarto-test
https://raw.githubusercontent.com/mcoffey77/3Dgempymodels
https://raw.githubusercontent.com/NASA-Openscapes/earthdata-cloud-cookbook
https://raw.githubusercontent.com/NewtonMAGIS/GISData
https://raw.githubusercontent.com/Openscapes/approach-guide
https://raw.githubusercontent.com/pommevilla/fake-bench
https://raw.githubusercontent.com/pommevilla/friendly-dollop
https://raw.githubusercontent.com/pommevilla/hinterland-harbor
https://raw.githubusercontent.com/pommevilla/incog-workbench
https://raw.githubusercontent.com/pommevilla/ll_quarto_slides
https://raw.githubusercontent.com/pommevilla/lunch_and_learn_and_quarto
https://raw.githubusercontent.com/pommevilla/navbar-shortcodes
https://raw.githubusercontent.com/pommevilla/quarto-action-tests
https://raw.githubusercontent.com/pommevilla/quarto-navbar-issue
https://raw.githubusercontent.com/pommevilla/quarto-render
https://raw.githubusercontent.com/pommevilla/quarto-web-redesign
https://raw.githubusercontent.com/qgis/QGIS
https://raw.githubusercontent.com/quarto-dev/quarto-cli
https://raw.githubusercontent.com/quarto-dev/quarto-web
https://raw.githubusercontent.com/RachelRalph/AI4PublicHealth
https://raw.githubusercontent.com/ravi740136/telerikprojects
https://raw.githubusercontent.com/ravi740136/teleriktests
https://raw.githubusercontent.com/rstub/diploma-thesis
https://raw.githubusercontent.com/rstudio/packrat
https://raw.githubusercontent.com/rstudio/rstudio
https://raw.githubusercontent.com/ruiqiangJiao/daily-recode
https://raw.githubusercontent.com/SanjeevBashyal/Project074
https://raw.githubusercontent.com/seneralkan/django_webgis
https://raw.githubusercontent.com/simonreise/chgkmap
https://raw.githubusercontent.com/Soniartha/webmap.minastahura
https://raw.githubusercontent.com/Soniartha/webmapminastahura
https://raw.githubusercontent.com/stevesong/web_otd
https://raw.githubusercontent.com/sungroup-sjtu/AIMS_FFOpt
https://raw.githubusercontent.com/szymon-datalions/conferences-and-workshops
https://raw.githubusercontent.com/togoAIO/d365Doku
https://raw.githubusercontent.com/Xingyinliu-Lab/QMD
https://raw.githubusercontent.com/yumipai-lab/QMD
46 users:
https://raw.githubusercontent.com/aocalderon
https://raw.githubusercontent.com/apreshill
https://raw.githubusercontent.com/arvindgoyal84
https://raw.githubusercontent.com/belivey
https://raw.githubusercontent.com/cscheid
https://raw.githubusercontent.com/eoinomahony
https://raw.githubusercontent.com/erick2307
https://raw.githubusercontent.com/fgianoli
https://raw.githubusercontent.com/fsdias
https://raw.githubusercontent.com/G4te-Keep3r
https://raw.githubusercontent.com/guillermodangelo
https://raw.githubusercontent.com/haideechu
https://raw.githubusercontent.com/hbrega
https://raw.githubusercontent.com/iliasrg
https://raw.githubusercontent.com/javimarlop
https://raw.githubusercontent.com/jiahui890
https://raw.githubusercontent.com/jjallaire
https://raw.githubusercontent.com/journalovi
https://raw.githubusercontent.com/kartoza
https://raw.githubusercontent.com/m2cci-emilie-sirot
https://raw.githubusercontent.com/maps4u
https://raw.githubusercontent.com/martinyan
https://raw.githubusercontent.com/matias-harari
https://raw.githubusercontent.com/matthew-brett
https://raw.githubusercontent.com/mcoffey77
https://raw.githubusercontent.com/NASA-Openscapes
https://raw.githubusercontent.com/NewtonMAGIS
https://raw.githubusercontent.com/Openscapes
https://raw.githubusercontent.com/pommevilla
https://raw.githubusercontent.com/qgis
https://raw.githubusercontent.com/quarto-dev
https://raw.githubusercontent.com/RachelRalph
https://raw.githubusercontent.com/ravi740136
https://raw.githubusercontent.com/rstub
https://raw.githubusercontent.com/rstudio
https://raw.githubusercontent.com/ruiqiangJiao
https://raw.githubusercontent.com/SanjeevBashyal
https://raw.githubusercontent.com/seneralkan
https://raw.githubusercontent.com/simonreise
https://raw.githubusercontent.com/Soniartha
https://raw.githubusercontent.com/stevesong
https://raw.githubusercontent.com/sungroup-sjtu
https://raw.githubusercontent.com/szymon-datalions
https://raw.githubusercontent.com/togoAIO
https://raw.githubusercontent.com/Xingyinliu-Lab
https://raw.githubusercontent.com/yumipai-lab
523 files:
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https://raw.githubusercontent.com/apreshill/r3-cloud/5b5a81beb14231aed99889a7fce0e36aa929b681/01-rmd-anatomy/01-explore-alison-params.qmd
https://raw.githubusercontent.com/apreshill/r3-cloud/5b5a81beb14231aed99889a7fce0e36aa929b681/01-rmd-anatomy/01-explore.qmd
https://raw.githubusercontent.com/apreshill/r3-cloud/5b5a81beb14231aed99889a7fce0e36aa929b681/02-output-tables/02-progress-alison.qmd
https://raw.githubusercontent.com/apreshill/r3-cloud/5b5a81beb14231aed99889a7fce0e36aa929b681/02-output-tables/02-progress.qmd
https://raw.githubusercontent.com/arvindgoyal84/gitpersonal/00a99ec2d357f06c93ef29bb54e6bd64d3f1b495/appservices/WEB-INF/conf/envProperties/etc/httpd/vhosts.d/virtual_host.conf.qmd
https://raw.githubusercontent.com/arvindgoyal84/gitpersonal/00a99ec2d357f06c93ef29bb54e6bd64d3f1b495/appservices/WEB-INF/conf/envProperties/opt/epocrates/webapps/appservices/WEB-INF/classes/log4j.xml.qmd
https://raw.githubusercontent.com/belivey/geo-admin/676b3431db1e483e5da001909a3b5327370d0a1f/database/seeds/data/l6/admin_level_6_reg_40.qmd
https://raw.githubusercontent.com/belivey/geo-admin/a34bd1c58c747151643f036b622893f0d723087e/database/seeds/data/l4/admin_level_4.qmd
https://raw.githubusercontent.com/belivey/geo-admin/b5750f3548a754a72b596448e6abff088ecc3b1a/database/seeds/data/l5/admin_level_5_reg_77.qmd
https://raw.githubusercontent.com/belivey/geo-admin/b5750f3548a754a72b596448e6abff088ecc3b1a/database/seeds/data/l8/admin_level_8_reg_77.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/27d3d84c5c5000917e6536c70934447beef59c15/features/dot.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/27d3d84c5c5000917e6536c70934447beef59c15/features/file-attachments.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/27d3d84c5c5000917e6536c70934447beef59c15/features/observable-modules.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/27d3d84c5c5000917e6536c70934447beef59c15/features/sending-values-to-ojs.qmd
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https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/module-tests/module-import-2.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/module-tests/module-import.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/module-tests/ojs-module.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/tests/index.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/tests/svg-test-1.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/tests/test-ojs-grammar-node-types.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/tests/test-ojs-object-inspector.qmd
https://raw.githubusercontent.com/cscheid/hello-quarto-ojs/37dff6dc75e3900f09599b704c509662b0a46e44/tests/test-ojs-viewof-1.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/adjoints-and-inverses.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/automatic-differentiation/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/bilinear-interpolation/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/convolution/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/duality.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/eigenvectors/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/error-correcting-output-codes.qmd/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/expectation.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/fagans-nomogram/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/kmeans/k-lines.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/lagrange-polynomials.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/linear-function-spaces/two-d/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/logistic-regression/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/model-assessment.qmd
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https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/pca.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/perceptron/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/probabilities.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/regularization/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/shapley-values.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/svd.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/svm/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/tda/index.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/tda/PH.qmd
https://raw.githubusercontent.com/cscheid/quarto-explainers/c69ca0276b4229fa5bda3412da371cf1c5324412/explainers/trigonometry/index.qmd
https://raw.githubusercontent.com/eoinomahony/1906_railways/fd72a9fd2fdc791ff2c3bd99f8c0514b216f64f2/metadata.qmd
https://raw.githubusercontent.com/erick2307/mizu-kenshu/1f022ea0be45f0f971c9373b711623f39cdcc5cb/spatial/esri_mesh4_miyagi.qmd
https://raw.githubusercontent.com/fgianoli/estateGIS/d244aa573d8f28c4a35acba1af34777ad97766b0/materiali/shp/prov.qmd
https://raw.githubusercontent.com/fsdias/blog_data/a7ee892b04e459af4bd835d67e3375d7718b3a9b/distances/polygons.qmd
https://raw.githubusercontent.com/G4te-Keep3r/HowdyHackers/fb6d391aaecb60ab5c4650d4ae2ddd599fd85db2/langs/7/file.qmd
https://raw.githubusercontent.com/guillermodangelo/polygon_grid/1f31a57355b5e39683547a79b5364f44760af8b9/input_data/angel_lopez.qmd
https://raw.githubusercontent.com/haideechu/nypd-traffic-arrests/6da1d06feb00cd3571432ae23becfe153afffc3b/traffic-arrests-cd-acs-2019-race-poverty/traffic-arrests-counts/traffic-arrests-count-cd-acs-2019-race-poverty-proj-102718.qmd
https://raw.githubusercontent.com/haideechu/nypd-traffic-arrests/6da1d06feb00cd3571432ae23becfe153afffc3b/traffic-arrests-count-by-cd.qmd
https://raw.githubusercontent.com/haideechu/nypd-traffic-arrests/6da1d06feb00cd3571432ae23becfe153afffc3b/traffic-arrests-qgis/traffic-arrests-acs-2019-tract-race-poverty/traffic-arrests-acs-2019-race-poverty-proj-4326.qmd
https://raw.githubusercontent.com/haideechu/nypd-traffic-arrests/6da1d06feb00cd3571432ae23becfe153afffc3b/traffic-arrests-qgis/traffic-arrests-acs-2019-tract-race-poverty/traffic-arrests-counts/traffic-arrest-counts-black-proj-4326.qmd
https://raw.githubusercontent.com/hbrega/sf1952/740f9519bf1da2cc3666ccfacb72bb5559c577cb/Objects/Aircraft/IAe_24_FAA/IAe_24_Calquin_loadout.ini.qmd
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@Alhadis Alhadis changed the title Map .qmd files to .rmd syntax highlighting Add .qmd to RMarkdown extensions Aug 15, 2021
@jjallaire
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Okay, that's fair. We haven't launched the project yet so all those users are early beta testers. I'll wait until we are well over the 200 repos and then resubmit.

@jjallaire jjallaire closed this Aug 15, 2021
@jjallaire jjallaire reopened this Mar 14, 2022
@jjallaire
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jjallaire commented Mar 14, 2022

Hi there, the extension search now turns up ~ 3,500 .qmd files on GitHub (up from 641 files 6 months ago). I couldn't ascertain an automated means of counting repositories, but extrapolating from the last search which as roughly 10 documents per repository we should be well over the required 200 repositories.

@lildude lildude merged commit c595774 into github-linguist:master Mar 24, 2022
@rogerbramon
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Hi @jjallaire and @lildude!

We are big fans of Quarto and heavily using it in our organization, we just lack the preview on GitHub.com ☺️. Since Quarto is very similar to Markdown, I tried adding *.qmd linguist-language=Markdown to .gitattributes so that is treated as Markdown, but the preview is somehow broken. You can check it here.

I opened a discussion on GitHub Community, but I got no reply, unfortunately.

What would be the next steps to get the preview working? Is it something I can add somewhere? Contribute to linguist? Or is it a bug on GitHub.com?

Many thanks!

@lildude
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lildude commented Mar 20, 2023

What would be the next steps to get the preview working? Is it something I can add somewhere? Contribute to linguist? Or is it a bug on GitHub.com?

All this sort of rendering is handled by the markup library so that would be a good place to start.

As an aside: I'm not involved in that project in anyway.

@jjallaire
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Hi @rogerbramon over the years there was much debate about whether GitHub should be rendering .Rmd files or showing the source. Ultimately the community came down squarely on the side of viewing the source, so that's how things also work with .qmd.

Note that GitHub only renders a subset of markdown so .Rmd and .qmd files often can't be rendered correctly anyway. If you want to see the content rendered on GitHub you should probably just render a .md file using the .gfm format and check that it: https://quarto.org/docs/output-formats/gfm.html

@rogerbramon
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All this sort of rendering is handled by the markup library so that would be a good place to start.

Thanks @lildude, very insightful.

@rogerbramon
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rogerbramon commented Mar 21, 2023

Hi @rogerbramon over the years there was much debate about whether GitHub should be rendering .Rmd files or showing the source. Ultimately the community came down squarely on the side of viewing the source, so that's how things also work with .qmd.

Note that GitHub only renders a subset of markdown so .Rmd and .qmd files often can't be rendered correctly anyway. If you want to see the content rendered on GitHub you should probably just render a .md file using the .gfm format and check that it: https://quarto.org/docs/output-formats/gfm.html

Thanks, @jjallaire for the context. I was able to find the debate and that the preview for RMarkdown was reverted.

I see the point, and I have mixed feelings about that. Perhaps because we use Quarto more for writing documentation and reports than notebooks and embedding code. In that case, I would refer having the preview because I can see the images, tables, and so on. We really love to take advantage of the features that Quarto adds on top of Markdown like captions, citations, cross-references, etc.

@jjallaire
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We really love to take advantage of the features that Quarto adds on top of Markdown like captions, citations, cross-references, etc.

Note that if GitHub rendered the .qmd files you actually wouldn't see your captions, citations, crossrefs, etc. (as those aren't supported by the renderer used on GitHub). I would suggest using format: gfm (https://quarto.org/docs/output-formats/gfm.html) to render .qmd to .md and then check the .md files into GitHub (which would then be rendered as normal, w/ resolved citations/crossrefs/etc.)

@github-linguist github-linguist locked as resolved and limited conversation to collaborators Jun 17, 2024
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