GCClassic 14.5.1 release #80
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This merge brings in the updates from the 14.5.0 release back into the dev/no-diff-to-benchmark branch. See the CHANGELOG.md for updates. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: af83cf8ca Merge PR # (Allow upcase logfile name in download_data.py) f149b460d Merge PR #2560 (Fix trace metals sim name in config files) These PRs add minor zero-diff fixes. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 67ce84a59 Merge PR #2532 (Add allocate guards in pressure_mod) This PR adds checks to make sure that we do not allocate arrays that are already allocated. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: cad65f085 Merge PR #2544 (Fixes for SatDiagn diagnostic counters) This PR fixes adds fixes to prevent the counters for the SatDiagn and SatDiagnEdge diagnostic collections from being inadvertently reset to zero. This had caused diagnostic fields to be steadily decreasing with time. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 135bdaaf3 Merge PR #2580 (Remove duplicate WD_RetFactor for HgClHO2) This PR removes a duplicated YAML tag in species_database.yml. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 7507eb590 Merge PR #2486 (Prevent seg fault in qfyaml) This PR fixes a seg fault that occurs in Headers/qfyaml_mod.F90 with certain compilers (such as Intel 2022.2.1) Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: e2157dc98 Merge PR #2542 (CESM fix: exclude hard dependencies on HEMCO) This PR fixes build issues when compiling GEOS-Chem in CESM. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 62f3db08b Merge PR #2578 (Fixes to compile GCHP adjoint) This PR fixes several compilation issues when building the GCHP adjoint. It does not affect "forward" GEOS-Chem Classic or GCHP simulations. Signed-off-by: Bob Yantosca <[email protected]>
src/CMakeLists.txt - Add CMake commands to define the KPP executable file, where it should be installed, and what it depends on. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
src/CMakeLists.txt - Added install command to place the kpp_standalone executable file in the run directory Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 4a10fac7e Merge PR #2593 (Prevent duration < frequency in History diags) This PR fixes an issue where empty diagnostic files could be created if the collection duration setting was less than the frequency setting. Now an error will be thrown and the run will halt. Signed-off-by: Bob Yantosca <[email protected]>
This merge brings PR #2588 (Add KPP Standalone into GEOS-Chem 14.5.1, by @yantosca and @obin1) into the GEOS-Chem "no-diff-to-benchmark" development stream. This PR does the following: 1. Adds an interface to save out the model state for input into the KPP Standalone box model 2. Adds the https://github.com/KineticPreProcessor/KPP-Standalone repo as a Git submodule. Signed-off-by: Bob Yantosca <[email protected]>
This merge brings PR #73 (Add KPP standalone into 14.5.1, by @yantosca and @obin1) into the GCClassic "no-diff-to-benchmark" development stream. This PR adds code to src/CMakeLists.txt so that the KPP standalone executable will be built if the fullchem or custom mechanism is chosen. Signed-off-by: Bob Yantosca <[email protected]>
Submodule src/GEOS-Chem a4e36e9..ed893d0: > Merge pull request #2608 from geoschem/bugfix/tagged_CO_restart Submodule src/HEMCO deaa192..d00af43: > Merge pull request #296 from geoschem/bugfix/reduce_hemco_read_prints_in_mpi Signed-off-by: Lizzie Lundgren <[email protected]>
Submodule src/GEOS-Chem ed893d0..990e8e4: > Merge pull request #2612 from geoschem/bugfix/typo_in_tagco_restart_date Signed-off-by: Lizzie Lundgren <[email protected]>
.ci-pipelines/build-matrix.yml .ci-pipelines/quick-build.yml - Changed "submodules: true" to "submodules: recursive" so that all levels of submodules will be fetched when cloning GEOS-Chem code in the continuous integration tests. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
Fix configuration error in GEOS-Chem Classic continuous integration tests on Azure
Submodule src/GEOS-Chem be335b7..990e8e4 (rewind):
< Merge pull request #2553 from geoschem/bugfix/geos
< Merge pull request #2523 from
yuanjianz/bugfix/Grell_Friedas_convection
Signed-off-by: Lizzie Lundgren <[email protected]>
Submodule src/GEOS-Chem be335b7..1a09d12:
> Merge pull request #2615 from geoschem/bugfix/
gchp_integration_test_issue_from_rundir_creation_message_change
Signed-off-by: Lizzie Lundgren <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 29f6c72c4 Merge PR #2617 (KPP standalone submodule update) This PR updates the KPP/standalone submodule hash to point to a bug fix (write KPP standalone output with 3-digit exponents, to avoid corrupted output). Signed-off-by: Bob Yantosca <[email protected]>
docs/source/geos-chem-shared-docs - Submodule update: Added KPP-Standalone Supplemental Guide (bc4d75c) docs/source/index.rst - Added KPP-Standalone Supplemental Guide to toctree CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
Fix CH4 livestock emissions hotspots and seasonality by reverting to EDGARv7 livestock emissions Signed-off-by: Melissa Sulprizio <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 20a93f331 Merge PR #2634 (Add sonde sites to kpp_standalone_interface.yml ) This PR updates the kpp_standalone_interface.yml file that is placed into rundirs using either fullchem and custom simulations. Extra "active cells" (sites to write output) have been added. Signed-off-by: Bob Yantosca <[email protected]>
src/CMakeLists.txt - Defined the KPPSA_FILE_NAME variable for all mechanisms - Call "add_executable(KPPSA_FILE_NAME ...) for all mechanisms - Added an else block to disable the KPPSA_FILE_NAME executable from being built except for fullchem & custom mechanisms - Wrapped the installation command for the KPPSA_FILE_NAME executable in an if block to ensure it is only built for fullchem & custom mechanisms. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
This merge brings PR #79 (Fixed error in CMake logic that attempted to build the KPP standalone for mechanisms other than fullchem and custom, by @yantosca) into the GEOS-Chem "no-diff-to-benchmark" development stream. This PR fixes a build issue that can occur when the CMake commands are given separately instead of as a single command. See issue #78 for details. Signed-off-by: Bob Yantosca <[email protected]>
docs/source/geos-chem-shared-docs - Submodule update to 4fc0461 (kpp_standalone_interface.yml update) docs/source/getting_started/login-env-parallel.rst - Fixed broken link to "Segmentation fault after TPCORE initialization" section in the "Understand error messages and what they mean" supplemental guide. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
Submodule src/GEOS-Chem 20a93f3..9c352ab: > Merge pull request #2642 from geoschem/bugfix/cesm_fixes > Merge pull request #2643 from geoschem/feature/clean_up_hemco_log_and_error_handling Submodule src/HEMCO d00af43..c76adbb: > Merge pull request #298 from geoschem/feature/improve_log_flexibility_in_hemco Signed-off-by: Lizzie Lundgren <[email protected]>
Signed-off-by: Lizzie Lundgren <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 18712bb Add extra examples to supplemental-guides/error-guide.rst This update adds documentation for additional common errors to the "Understanding what error messages mean" supplemental guide. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: f43e771fa Merge PR #2669 (Implement Australian Hg emissions) This PR implements a new emissions inventory for the Hg simulation, based on MacFarlane et al. [2022]. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 3de2b85f6 Merge PR #2670 (Warn users not to change BC freq in HISTORY.rc) This PR adds a warning to the HISTORY.rc template files. Signed-off-by: Bob Yantosca <[email protected]>
Signed-off-by: Melissa Sulprizio <[email protected]>
This commit informs the GCClassic superproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: ab77f5279 Merge PR #2674 (Harvard Cannon int test now use GNU12 compilers) This PR changes the default compiler used by integration tests on Harvard Cannon from GCC 10.2.0 to GCC 12.2.0. Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the GCClassicsuperproject about the following commits that were pushed to the GitHub geoschem/geos-chem repository: 48358bc0a Merge PR #2675 (Bugfix for GCHP to read meteorology from YAML) According to @lizziel: I believe this fixes an issue brought in with the updates for GEOS-IT in dev/no-diff-to-benchmark (see PR #2523). It would only show up for GEOS-FP and GEOS-IT runs which we do not test in integration/AWS testing, and is not in any previously released versions. It therefore does not need an update to the changelog. Signed-off-by: Bob Yantosca <[email protected]>
This merge brings the commits from the "no-diff-to-benchmark" development stream into the release/14.5.1 branch, in anticipation of the GCClassic 14.5.1 release. Signed-off-by: Bob Yantosca <[email protected]>
This merge brings ReadTheDocs updates for GEOS-Chem 14.5.1 into the release/14.5.1 branch, in anticipation of the 14.5.1 release. Signed-off-by: Bob Yantosca <[email protected]>
This is the official release commit of GEOS-Chem Classic aka GCClassic) 14.5.1. Updated version numbers in: - CHANGELOG.md - CMakeLists.txt - docs/source/conf.py Updated GEOS-Chem submodule to version 14.5.1 Updated HEMCO submodule to version 3.10.1 Updated geos-chem-shared-docs submodule to commit 18712bb Also updated CHANGELOG.md with the latest information. Signed-off-by: Bob Yantosca <[email protected]>
lizziel
approved these changes
Jan 10, 2025
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Name and Institution (Required)
Name: Bob Yantosca
Institution: Harvard + GCST
Describe the update
This PR seeks to merge the
release/14.5.1branch intomainin anticipation of the GCClassic 14.5.1 release.The
release/14.5.1branch containsdev/no-diff-to-benchmarkExpected changes
This is a no-diff-to-benchmark update
Tagging @msulprizio @lizziel