fix urls, the folder has now underscore

tools/ucsc_tools/fasplit/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: faSplit is a tool to split a single FASTA file into several files
 long_description: faSplit is a tool to split a single FASTA file into several files
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fasplit
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fasplit
 type: unrestricted
 categories:
   - Fasta Manipulation

tools/ucsc_tools/fatovcf/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: Convert a FASTA alignment file to Variant Call Format (VCF) single-nucleotide diffs
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
 long_description: Convert a FASTA alignment file to Variant Call Format (VCF) single-nucleotide diffs by comparing the given FASTA sequences with a selectable reference. In default setting the first entry of the FASTA alignment file will serve as a reference.
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fatovcf
 type: unrestricted
 categories:
 - Convert Formats

tools/ucsc_tools/maftoaxt/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: Convert dataset from MAF to axt format
 long_description: Convert MAF dataset to axt format. Depending on parameters and the number of alignments in the MAF file this can be a full conversion or data extraction.
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/maftoaxt
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftoaxt
 type: unrestricted
 categories:
 - Convert Formats

tools/ucsc_tools/twobittofa/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: twoBitToFa is a tool to convert all or part of .2bit file to FASTA
 long_description: twoBitToFa is a tool to convert all or part of .2bit file to FASTA
 homepage_url: https://genome.ucsc.edu/goldenpath/help/twoBit.html
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/twobittofa
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/twobittofa
 type: unrestricted
 categories:
   - Convert Formats

tools/ucsc_tools/ucsc_axtchain/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: Chain together genome alignments
 long_description: Create a chain file from a genome alignment. The chain format describes a pairwise alignment that allow gaps in both sequences simultaneously.
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/axtchain
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/axtchain
 type: unrestricted
 categories:
 - Sequence Analysis

tools/ucsc_tools/ucsc_axttomaf/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: Convert dataset from axt to MAF format.
 long_description: This is a tool from the UCSC suite to convert dataset from axt to MAF format.
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/axttomaf
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/axttomaf
 type: unrestricted
 categories:
 - Convert Formats

tools/ucsc_tools/ucsc_chainnet/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: Make alignment nets out of chains
 long_description:
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/ucsc_chainnet
 type: unrestricted
 categories:
 - Sequence Analysis

tools/ucsc_tools/ucsc_chainprenet/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: Remove chains that don't have a chance of being netted
 long_description: Some chains can't be converted to a net, this tool filters them out. Part of the UCSC genome browser utilities to work with the chain format.
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/chainprenet
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainprenet
 type: unrestricted
 categories:
 - Sequence Analysis

tools/ucsc_tools/ucsc_chainsort/.shed.yml

@@ -3,7 +3,7 @@ owner: iuc
 description: Sort chains. By default sorts by score.
 long_description: Note this loads all chains into memory, so it is not suitable for large sets.  Instead, run chainSort on multiple small files, followed by chainMergeSort.
 homepage_url: http://hgdownload.cse.ucsc.edu/admin/exe/
-remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/chainsort
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainsort
 type: unrestricted
 categories:
   - Sequence Analysis