Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

OMark: fix optional options #5817

Merged
merged 1 commit into from
Mar 12, 2024
Merged

OMark: fix optional options #5817

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion tools/omark/macros.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
<macros>
<token name="@TOOL_VERSION@">0.3.0</token>
<token name="@VERSION_SUFFIX@">1</token>
<token name="@VERSION_SUFFIX@">2</token>

<xml name="requirements">
<requirement type="package" version="@TOOL_VERSION@">omark</requirement>
Expand Down
19 changes: 14 additions & 5 deletions tools/omark/omark.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17,11 +17,20 @@
-f 'output_omamer'
-d '$database.fields.path'
$omark_mode
-i '$input_iso'
-t '$t'
-r '$r'
-o omark_galaxy
#if $input_iso:
-i '$input_iso'
#end if
#if $t:
-t '$t'
#end if
#if $r:
-r '$r'
#end if
-o omark_galaxy
]]></command>

<inputs>
Expand Down Expand Up @@ -49,7 +58,7 @@
<validator type="regex">[0-9a-zA-Z_]+</validator>
</param>

<param name="outputs" type="select" optional="true" multiple="true" label="Which outputs should be generated">
<param name="outputs" type="select" multiple="true" label="Which outputs should be generated">
<option value="detail_sum" selected="true">Detailed summary</option>
<option value="hog">HOG identifiers</option>
<option value="pdf">PDF Graphic representation </option>
Expand Down