emboss6

[bernt-matthias]

Fixes: #5709 #65

Started ...

• include Add EMBOSS 6: fuzznuc #4347 and emboss implement missing parameters #4734
• check Fix invalid datatypes #4009 Fix tool section ordering #4100 Unused tool parameters #4085 Fix test parameters that are not defined in the inputs #4095 Fix duplicated options #4091
• all tools need tests
• check test parameters with value yes/no (remnants off new bool parameters that should be true / false)
• fix inputs with format data
• add changeformat for outputs (in particular where out_format* is available)

FOR CONTRIBUTOR:

• - I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• - License permits unrestricted use (educational + commercial)
• - This PR adds a new tool or tool collection
• - This PR updates an existing tool or tool collection
• - This PR does something else (explain below)