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spades: add OMP_THREAD_LIMIT #4711

Merged
merged 2 commits into from
Aug 10, 2022
Merged

spades: add OMP_THREAD_LIMIT #4711

merged 2 commits into from
Aug 10, 2022

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bernt-matthias
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despite the -t argument spades may run only sequential.
you find in the logs:

Maximum # of threads to use (adjusted due to OMP capabilities): 1

FOR CONTRIBUTOR:

  • - I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • - License permits unrestricted use (educational + commercial)
  • - This PR adds a new tool or tool collection
  • - This PR updates an existing tool or tool collection
  • - This PR does something else (explain below)

@bernt-matthias
spades: add OMP_THREAD_LIMIT
6fd67ae 
despite the `-t` argument spades may run only sequential.
you find in the logs:

```
Maximum # of threads to use (adjusted due to OMP capabilities): 1
```
@bernt-matthias bernt-matthias merged commit 35f71aa into galaxyproject:master Aug 10, 2022
@bernt-matthias bernt-matthias deleted the topic/spades-omp branch August 10, 2022 12:41
@bernt-matthias bernt-matthias mentioned this pull request Aug 10, 2022
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@bgruening bgruening bgruening approved these changes

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@bernt-matthias @bgruening