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corrected test-data
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nilchia committed May 11, 2024
1 parent 0d484e8 commit e0d3ab7
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Showing 2 changed files with 116 additions and 116 deletions.
4 changes: 2 additions & 2 deletions tools/chewbbaca/AlleleCall.xml
Original file line number Diff line number Diff line change
Expand Up @@ -142,7 +142,7 @@
</output_collection>
<output name="unclassified_fasta">
<assert_contents>
<has_text_matching expression="GCA_000007265-protein15"/>
<has_text_matching expression="GCA_000007265_1_ASM726v1_genomic-protein15"/>
<has_text_matching expression="ATGCACCACCTGTCACTTCTGCTCCGAAGAGAAAGCCTATCTCTAGGCCGGTCAGAAGGATGTCAAGACCTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGCGTTAG"/>
</assert_contents>
</output>
Expand Down Expand Up @@ -184,7 +184,7 @@
</output_collection>
<output name="unclassified_fasta">
<assert_contents>
<has_text_matching expression="GCA_000007265-protein15"/>
<has_text_matching expression="GCA_000007265_1_ASM726v1_genomic_fna-protein83"/>
<has_text_matching expression="ATGCACCACCTGTCACTTCTGCTCCGAAGAGAAAGCCTATCTCTAGGCCGGTCAGAAGGATGTCAAGACCTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCAACCTTGCGGTCGTACTCCCCAGGCGGAGTGCTTAATGCGTTAG"/>
</assert_contents>
</output>
Expand Down
228 changes: 114 additions & 114 deletions tools/chewbbaca/test-data/cds_coordinates.tsv
Original file line number Diff line number Diff line change
@@ -1,115 +1,115 @@
Genome Contig Start Stop Protein_ID Coding_Strand
GCA_000007265 AE009948.1 54 1463 1 1
GCA_000007265 AE009948.1 1618 2754 2 1
GCA_000007265 AE009948.1 2812 3705 3 1
GCA_000007265 AE009948.1 3715 3912 4 1
GCA_000007265 AE009948.1 4114 4317 5 1
GCA_000007265 AE009948.1 4477 5592 6 1
GCA_000007265 AE009948.1 5676 6251 7 1
GCA_000007265 AE009948.1 6248 9745 8 1
GCA_000007265 AE009948.1 10036 10308 9 1
GCA_000007265 AE009948.1 10295 10666 10 1
GCA_000007265 AE009948.1 10803 12089 11 1
GCA_000007265 AE009948.1 12091 13365 12 1
GCA_000007265 AE009948.1 13370 13912 13 1
GCA_000007265 AE009948.1 13935 15911 14 1
GCA_000007265 AE009948.1 17272 17466 15 -1
GCA_000007265 AE009948.1 23103 23297 17 -1
GCA_000007265 AE009948.1 92080 92274 88 -1
GCA_000007265 AE009948.1 20579 20866 16 1
GCA_000007265 AE009948.1 26410 26697 18 1
GCA_000007265 AE009948.1 95387 95674 89 1
GCA_000007265 AE009948.1 28902 30245 19 1
GCA_000007265 AE009948.1 30369 31337 20 1
GCA_000007265 AE009948.1 31334 32620 21 1
GCA_000007265 AE009948.1 32610 33371 22 1
GCA_000007265 AE009948.1 33434 34312 23 1
GCA_000007265 AE009948.1 34390 35382 24 1
GCA_000007265 AE009948.1 35393 35632 25 1
GCA_000007265 AE009948.1 35756 36460 26 1
GCA_000007265 AE009948.1 36583 40308 27 1
GCA_000007265 AE009948.1 40720 42174 28 1
GCA_000007265 AE009948.1 42202 43224 29 1
GCA_000007265 AE009948.1 43392 43940 30 1
GCA_000007265 AE009948.1 43963 44715 31 1
GCA_000007265 AE009948.1 44735 46282 32 1
GCA_000007265 AE009948.1 46475 47374 33 1
GCA_000007265 AE009948.1 47521 48825 34 1
GCA_000007265 AE009948.1 49072 49770 35 1
GCA_000007265 AE009948.1 49817 51133 36 1
GCA_000007265 AE009948.1 51221 52108 37 1
GCA_000007265 AE009948.1 52118 52948 38 1
GCA_000007265 AE009948.1 52961 53404 39 1
GCA_000007265 AE009948.1 53424 54086 40 1
GCA_000007265 AE009948.1 54083 55000 41 1
GCA_000007265 AE009948.1 55017 55898 42 1
GCA_000007265 AE009948.1 55906 56883 43 1
GCA_000007265 AE009948.1 56906 57709 44 -1
GCA_000007265 AE009948.1 57991 59256 45 1
GCA_000007265 AE009948.1 59588 60025 46 1
GCA_000007265 AE009948.1 60012 61103 47 1
GCA_000007265 AE009948.1 61157 62548 48 1
GCA_000007265 AE009948.1 62573 63871 49 1
GCA_000007265 AE009948.1 64023 64934 50 1
GCA_000007265 AE009948.1 65231 66229 51 1
GCA_000007265 AE009948.1 66381 66818 52 1
GCA_000007265 AE009948.1 66825 67205 53 1
GCA_000007265 AE009948.1 67202 68980 54 1
GCA_000007265 AE009948.1 69250 71892 55 1
GCA_000007265 AE009948.1 72071 73087 56 1
GCA_000007265 AE009948.1 73207 74697 57 1
GCA_000007265 AE009948.1 74802 76082 58 1
GCA_000007265 AE009948.1 76288 76596 59 1
GCA_000007265 AE009948.1 76701 77327 60 1
GCA_000007265 AE009948.1 77351 77974 61 1
GCA_000007265 AE009948.1 77974 78270 62 1
GCA_000007265 AE009948.1 78288 79121 63 1
GCA_000007265 AE009948.1 79220 79498 64 1
GCA_000007265 AE009948.1 79514 79858 65 1
GCA_000007265 AE009948.1 79871 80524 66 1
GCA_000007265 AE009948.1 80528 80941 67 1
GCA_000007265 AE009948.1 80951 81157 68 1
GCA_000007265 AE009948.1 81183 81443 69 1
GCA_000007265 AE009948.1 81468 81836 70 1
GCA_000007265 AE009948.1 81916 82221 71 1
GCA_000007265 AE009948.1 82245 82787 72 1
GCA_000007265 AE009948.1 82805 82990 73 1
GCA_000007265 AE009948.1 83145 83543 74 1
GCA_000007265 AE009948.1 83653 84189 75 1
GCA_000007265 AE009948.1 84290 84646 76 1
GCA_000007265 AE009948.1 84665 85159 77 1
GCA_000007265 AE009948.1 85174 85353 78 1
GCA_000007265 AE009948.1 85478 85918 79 1
GCA_000007265 AE009948.1 85939 87243 80 1
GCA_000007265 AE009948.1 87338 87976 81 1
GCA_000007265 AE009948.1 88092 88310 82 1
GCA_000007265 AE009948.1 88336 88452 83 1
GCA_000007265 AE009948.1 88470 88835 84 1
GCA_000007265 AE009948.1 88853 89236 85 1
GCA_000007265 AE009948.1 89286 90224 86 1
GCA_000007265 AE009948.1 90239 90625 87 1
GCA_000007265 AE009948.1 97888 98076 90 1
GCA_000007265 AE009948.1 98076 98246 91 1
GCA_000007265 AE009948.1 98316 98486 92 1
GCA_000007265 AE009948.1 98822 99082 93 -1
GCA_000007265 AE009948.1 99401 99952 94 1
GCA_000007265 AE009948.1 100172 100591 95 1
GCA_000007265 AE009948.1 100791 101270 96 1
GCA_000007265 AE009948.1 101392 102084 97 1
GCA_000007265 AE009948.1 102081 102833 98 1
GCA_000007265 AE009948.1 102830 103405 99 1
GCA_000007265 AE009948.1 103548 104582 100 1
GCA_000007265 AE009948.1 104624 105157 101 1
GCA_000007265 AE009948.1 105338 107167 102 1
GCA_000007265 AE009948.1 107456 108595 103 1
GCA_000007265 AE009948.1 108709 109956 104 1
GCA_000007265 AE009948.1 110027 110803 105 1
GCA_000007265 AE009948.1 110766 111524 106 1
GCA_000007265 AE009948.1 111534 111998 107 1
GCA_000007265 AE009948.1 111995 112564 108 1
GCA_000007265 AE009948.1 112601 113443 109 -1
GCA_000007265 AE009948.1 113600 114883 110 1
GCA_000007265 AE009948.1 115072 115647 111 1
GCA_000007265 AE009948.1 115920 117524 112 1
GCA_000007265 AE009948.1 117633 118559 113 1
GCA_000007265 AE009948.1 118754 119200 114 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 54 1463 1 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 1618 2754 2 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 2812 3705 3 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 3715 3912 4 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 4114 4317 5 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 4477 5592 6 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 5676 6251 7 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 6248 9745 8 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 10036 10308 9 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 10295 10666 10 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 10803 12089 11 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 12091 13365 12 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 13370 13912 13 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 13935 15911 14 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 17272 17466 15 -1
GCA_000007265_1_ASM726v1_genomic AE009948.1 23103 23297 17 -1
GCA_000007265_1_ASM726v1_genomic AE009948.1 92080 92274 88 -1
GCA_000007265_1_ASM726v1_genomic AE009948.1 20579 20866 16 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 26410 26697 18 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 95387 95674 89 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 28902 30245 19 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 30369 31337 20 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 31334 32620 21 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 32610 33371 22 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 33434 34312 23 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 34390 35382 24 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 35393 35632 25 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 35756 36460 26 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 36583 40308 27 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 40720 42174 28 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 42202 43224 29 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 43392 43940 30 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 43963 44715 31 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 44735 46282 32 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 46475 47374 33 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 47521 48825 34 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 49072 49770 35 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 49817 51133 36 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 51221 52108 37 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 52118 52948 38 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 52961 53404 39 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 53424 54086 40 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 54083 55000 41 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 55017 55898 42 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 55906 56883 43 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 56906 57709 44 -1
GCA_000007265_1_ASM726v1_genomic AE009948.1 57991 59256 45 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 59588 60025 46 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 60012 61103 47 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 61157 62548 48 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 62573 63871 49 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 64023 64934 50 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 65231 66229 51 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 66381 66818 52 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 66825 67205 53 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 67202 68980 54 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 69250 71892 55 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 72071 73087 56 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 73207 74697 57 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 74802 76082 58 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 76288 76596 59 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 76701 77327 60 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 77351 77974 61 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 77974 78270 62 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 78288 79121 63 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 79220 79498 64 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 79514 79858 65 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 79871 80524 66 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 80528 80941 67 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 80951 81157 68 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 81183 81443 69 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 81468 81836 70 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 81916 82221 71 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 82245 82787 72 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 82805 82990 73 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 83145 83543 74 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 83653 84189 75 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 84290 84646 76 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 84665 85159 77 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 85174 85353 78 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 85478 85918 79 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 85939 87243 80 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 87338 87976 81 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 88092 88310 82 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 88336 88452 83 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 88470 88835 84 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 88853 89236 85 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 89286 90224 86 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 90239 90625 87 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 97888 98076 90 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 98076 98246 91 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 98316 98486 92 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 98822 99082 93 -1
GCA_000007265_1_ASM726v1_genomic AE009948.1 99401 99952 94 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 100172 100591 95 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 100791 101270 96 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 101392 102084 97 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 102081 102833 98 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 102830 103405 99 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 103548 104582 100 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 104624 105157 101 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 105338 107167 102 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 107456 108595 103 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 108709 109956 104 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 110027 110803 105 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 110766 111524 106 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 111534 111998 107 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 111995 112564 108 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 112601 113443 109 -1
GCA_000007265_1_ASM726v1_genomic AE009948.1 113600 114883 110 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 115072 115647 111 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 115920 117524 112 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 117633 118559 113 1
GCA_000007265_1_ASM726v1_genomic AE009948.1 118754 119200 114 1

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