fix linting

galaxyproject · May 3, 2024 · 6e1b4f2 · 6e1b4f2
1 parent 0b25490
commit 6e1b4f2
Showing 1 changed file with 9 additions and 7 deletions.
diff --git a/tools/bowtie2/bowtie2_macros.xml b/tools/bowtie2/bowtie2_macros.xml
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">2.5.3</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <!-- Import this at the top of your command block and then
          define rg_auto_name. -->
     <token name="@define_read_group_helpers@">
@@ -59,15 +59,15 @@
 #if $use_rg
     #if $rg_param('read_group_id_conditional') is None
         #set $rg_id = $rg_auto_name
-    #elif $rg_param('read_group_id_conditional').do_auto_name
+    #elif $rg_param('read_group_id_conditional').do_auto_name == 'true'
         #set $rg_id = $rg_auto_name
     #else
         #set $rg_id = str($rg_param('read_group_id_conditional').ID)
     #end if
 
     #if $rg_param('read_group_sm_conditional') is None
         #set $rg_sm = ''
-    #elif $rg_param('read_group_sm_conditional').do_auto_name
+    #elif $rg_param('read_group_sm_conditional').do_auto_name == 'true'
         #set $rg_sm = $rg_auto_name
     #else
         #set $rg_sm = str($rg_param('read_group_sm_conditional').SM)
@@ -81,7 +81,7 @@
 
     #if $rg_param('read_group_lb_conditional') is None
         #set $rg_lb = ''
-    #elif $rg_param('read_group_lb_conditional').do_auto_name
+    #elif $rg_param('read_group_lb_conditional').do_auto_name == 'true'
         #set $rg_lb = $rg_auto_name
     #else
         #set $rg_lb = str($rg_param('read_group_lb_conditional').LB)
@@ -140,9 +140,11 @@
 #set $use_rg = str($rg.rg_selector) != "do_not_set"
     </token>
     <xml name="read_group_auto_name_conditional">
-        <param name="do_auto_name" type="boolean" label="Auto-assign" help="Use dataset name or collection information to automatically assign this value" checked="false" />
-        <when value="true">
-        </when>
+        <param name="do_auto_name" type="select" label="Auto-assign" help="Use dataset name or collection information to automatically assign this value">
+            <option value="false">No</option>
+            <option value="true">Yes</option>
+        </param>
+        <when value="true"/>
         <when value="false">
             <yield />
         </when>