Updating tools/drep from version 3.4.5 to 3.5.0 (#5806)

* Updating tools/drep from version 3.4.5 to 3.5.0 * fix lint * Update drep_compare.xml * Update drep_dereplicate.xml --------- Co-authored-by: planemo-autoupdate <[email protected]> Co-authored-by: Björn Grüning <[email protected]>
galaxyproject · May 19, 2024 · 583548e · 583548e
1 parent 3e7bf5a
commit 583548e
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diff --git a/tools/drep/drep_compare.xml b/tools/drep/drep_compare.xml
@@ -1,10 +1,10 @@
-<tool id="drep_compare" name="dRep compare" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" python_template_version="3.5">
+<tool id="drep_compare" name="dRep compare" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>compare a list of genomes</description>
-    <expand macro="biotools" />
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro="requirements" />
+    <expand macro="biotools" />
+    <expand macro="requirements" />   
     <command detect_errors="exit_code"><![CDATA[
 @PREPARE_GENOMES@
 dRep compare outdir

diff --git a/tools/drep/drep_dereplicate.xml b/tools/drep/drep_dereplicate.xml
@@ -1,9 +1,9 @@
-<tool id="drep_dereplicate" name="dRep dereplicate" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@" python_template_version="3.5">
+<tool id="drep_dereplicate" name="dRep dereplicate" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>De-replicate a list of genomes</description>
-    <expand macro="biotools" />
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools" />
     <expand macro="requirements">
         <requirement type="package" version="1.2.2">checkm-genome</requirement>
     </expand>

diff --git a/tools/drep/macros.xml b/tools/drep/macros.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">3.4.5</token>
+    <token name="@TOOL_VERSION@">3.5.0</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">20.01</token>
     <xml name="biotools">