Skip to content

Commit

Permalink
update tests data
Browse files Browse the repository at this point in the history
  • Loading branch information
rlibouba committed Apr 20, 2023
1 parent c631d2f commit 43e7738
Show file tree
Hide file tree
Showing 2 changed files with 11 additions and 12 deletions.
21 changes: 10 additions & 11 deletions tools/repeatmasker/test-data/small.fasta.gff
Original file line number Diff line number Diff line change
@@ -1,11 +1,10 @@
##gff-version 2
##date 2021-05-20
##sequence-region rm_input.fasta
scaffold_1 RepeatMasker similarity 613 632 0.0 + . Target "Motif:(GT)n" 1 20
scaffold_1 RepeatMasker similarity 780 824 18.3 + . Target "Motif:(ATAATA)n" 1 45
scaffold_1 RepeatMasker similarity 2231 2274 23.9 + . Target "Motif:(CAGA)n" 1 46
scaffold_1 RepeatMasker similarity 4853 4901 18.4 + . Target "Motif:(TC)n" 1 54
scaffold_1 RepeatMasker similarity 6230 6284 19.1 + . Target "Motif:(TAATTAA)n" 1 52
scaffold_1 RepeatMasker similarity 6548 6606 28.3 + . Target "Motif:(GACA)n" 1 57
scaffold_1 RepeatMasker similarity 11981 12050 2.9 + . Target "Motif:(CT)n" 1 71
scaffold_1 RepeatMasker similarity 12078 12113 15.4 + . Target "Motif:(CT)n" 1 37
##gff-version 3
##sequence-region scaffold_1 1 14220
scaffold_1 RepeatMasker dispersed_repeat 613 632 0.0 + . ID=1;Target "Motif:(GT)n" 1 20
scaffold_1 RepeatMasker dispersed_repeat 780 824 18.3 + . ID=2;Target "Motif:(ATAATA)n" 1 45
scaffold_1 RepeatMasker dispersed_repeat 2231 2274 23.9 + . ID=3;Target "Motif:(CAGA)n" 1 46
scaffold_1 RepeatMasker dispersed_repeat 4853 4901 18.4 + . ID=4;Target "Motif:(TC)n" 1 54
scaffold_1 RepeatMasker dispersed_repeat 6230 6284 19.1 + . ID=5;Target "Motif:(TAATTAA)n" 1 52
scaffold_1 RepeatMasker dispersed_repeat 6548 6606 28.3 + . ID=6;Target "Motif:(GACA)n" 1 57
scaffold_1 RepeatMasker dispersed_repeat 11981 12050 2.9 + . ID=7;Target "Motif:(CT)n" 1 71
scaffold_1 RepeatMasker dispersed_repeat 12078 12113 15.4 + . ID=8;Target "Motif:(CT)n" 1 37
2 changes: 1 addition & 1 deletion tools/repeatmasker/test-data/small.fasta.stats
Original file line number Diff line number Diff line change
Expand Up @@ -56,5 +56,5 @@ Low complexity: 0 0 bp 0.00 %
RepeatMasker version 4.1.5 , default mode

run with rmblastn version 2.13.0+
The query was compared to unclassified sequences in ".../dataset_460aae93-6f85-4362-840d-d15d07f8f788.dat"
The query was compared to unclassified sequences in ".../dataset_01b79536-5cb7-47c1-a696-23dbb13fa826.dat"
FamDB:

0 comments on commit 43e7738

Please sign in to comment.