add lncRNAs annotation workflow

workflows/genome_annotation/lncRNAs_annotation/.dockstore.yml

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+version: 1.2
+workflows:
+- name: main
+  subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Galaxy-Workflow-lncRNAs_annotation_workflow.ga
+  testParameterFiles:
+  - /Galaxy-Workflow-lncRNAs_annotation_workflow-tests.yml
+  authors:
+  - name: Romane Libouban
+    email: [email protected]

workflows/genome_annotation/lncRNAs_annotation/CHANGELOG.md

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+# Changelog
+
+## [0.1]
+
+Initial version of the lncRNAs annotation workflow.

workflows/genome_annotation/lncRNAs_annotation/Galaxy-Workflow-lncRNAs_annotation_workflow-tests.yml

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+- doc: Test outline for Galaxy-Workflow-lncRNAs_annotation_workflow.ga
+  job:
+    Genome assembly:
+      class: File
+      location: https://zenodo.org/records/11367439/files/genome_assembly.fasta
+      filetype: fasta
+    Genome annotation:
+      class: File
+      location: https://zenodo.org/records/11367439/files/genome_annotation.gff3
+      filetype: gff3
+    RNA-Seq:
+      class: File
+      location: https://zenodo.org/records/11367439/files/SRR8534859_RNASeq_mapped.bam
+      filetype: bam
+
+
+  outputs:
+    genome_annotation_gtf:
+      location: https://zenodo.org/records/13941438/files/gffread.gtf?download=1
+      compare: sim_size
+      delta: 300000    
+
+    stringtie_gtf:
+      location: https://zenodo.org/records/13941438/files/StringTie.gtf?download=1
+      compare: sim_size
+      delta: 300000
+
+    lcnRNA_annotation:
+      location: https://zenodo.org/records/13941438/files/lncRNA_annotation_FEELnc.gtf?download=1
+      compare: sim_size
+      delta: 300000
+    classification:
+      location: https://zenodo.org/records/13941438/files/Classifier_FEELnc.txt?download=1
+      compare: sim_size
+      delta: 300000
+
+    lncRNA_genome_annotation:
+      location: https://zenodo.org/records/13941438/files/Concatenate_datasets.gtf?download=1
+      compare: sim_size
+      delta: 300000