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Updating workflows/virology/pox-virus-amplicon from 0.1 to 0.2 #187

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planemo-autoupdate
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Hello! This is an automated update of the following workflow: workflows/virology/pox-virus-amplicon. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c+galaxy1
  • toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy6 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.2+galaxy0

The workflow release number has been updated from 0.1 to 0.2.

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@wm75 wm75 left a comment

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None of these two tool "updates" is desirable.
The first would mean downgrading, the second would update to a version suffering from a drastic performance regression.

@wm75 wm75 closed this Mar 17, 2023
@lldelisle
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@wm75,
For info, the log says that the qualimap_bamqc has been downgraded but in the workflow it is not. This is a problem we already observed with @mvdbeek

@planemo-autoupdate planemo-autoupdate deleted the workflows/virology/pox-virus-amplicon branch April 17, 2023 07:57
@lldelisle lldelisle mentioned this pull request Sep 15, 2023
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3 participants