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Updating workflows/transcriptomics/rnaseq-sr from 0.4 to 0.5 #186

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use regex on tests
lldelisle committed Sep 12, 2023
commit 5141c089d6bc29e7991b4f305e4a426e68efe79b
10 changes: 5 additions & 5 deletions workflows/transcriptomics/rnaseq-sr/rnaseq-sr-tests.yml
Original file line number Diff line number Diff line change
@@ -50,8 +50,8 @@
n: 4
star:
asserts:
has_text:
text: "GSM461177\t1051466.0\t35.0\t871202.0\t82.86\t35.4\t51184.0\t50995.0\t50810.0\t343.0\t12.0\t19.0\t0.48\t0.0\t1.48\t0.0\t1.36\t91809.0\t8.73\t34515.0\t3.28\t0.0\t4.76\t0.37\t0\t50050\t3890"
has_text_matching:
expression: "GSM461177\t1051466.0\t35.0\t871202.0\t82.86\t35.4\t51184.0\t50995.0\t50810.0\t343.0\t12.0\t19.0\t0.48\t0.0\t1.48\t0.0\t1.36\t9180[89].0\t8.73\t34515.0\t3.28\t0.0\t4.76\t0.37\t0\t5005[01]\t3890"
MultiQC webpage:
asserts:
- that: "has_text"
@@ -84,14 +84,14 @@
element_tests:
GSM461177:
asserts:
has_text:
text: "FBgn0031217\t-\t-\tFBgn0031217\tCG11377\t-\tchr2L:102379-104142\t-\t-\t32.1016\t22.1771\t42.0259\tOK"
has_text_matching:
expression: "FBgn0031217\t-\t-\tFBgn0031217\tCG11377\t-\tchr2L:102379-104142\t-\t-\t32.1016\t22.1771\t42.02[0-9]*\tOK"
genes_expression_stringtie:
element_tests:
GSM461177:
asserts:
has_text:
text: "FBgn0031217 CG11377 chr2L + 102380 104142 0.994315 32.391769 56.255165"
text: "FBgn0031217\tCG11377\tchr2L\t+\t102380\t104142\t0.994315\t32.391769\t56.255165"
both strands coverage:
element_tests:
GSM461177: