Fix commas that shouldn't be in biotools_mappings.tsv

[jmchilton]

Fixes #18903

How to test the changes?

(Select all options that apply)

• Instructions for manual testing are as follows:
  1. I don't know - check the file for commas after the commit I guess 😅

License

• I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

[mvdbeek]

I guess these are coming from an upstream source https://github.com/bio-tools/content if i can believe galaxy.yml.sample ? That repo doesn't exist anymore though, so ... ?

[hexylena]

@mvdbeek https://archive.softwareheritage.org/browse/origin/directory/?origin_url=https://github.com/bio-tools/content at least they warned us 😆

IMPORTANT : this repo is a sandbox: do not use it for production purposes! It's entire contents may change, be reorganised or even deleted without notice.

@jmchilton you might also be missing the ones with spaces? e.g. L263 rxlr_motifs. And in that case i would argue both biotools xrefs are relevant. do we need to pick one? is there a way to have both annotations?

[bgruening]

I guess these are coming from an upstream source https://github.com/bio-tools/content if i can believe galaxy.yml.sample ? That repo doesn't exist anymore though, so ... ?

Its redirecting to https://github.com/research-software-ecosystem/content ... is the redirect not working for you?

[hexylena]

https://github.com/galaxyproject/galaxy/pull/18919/files#diff-fd14abe36b9effe9869962313d1b668af331e9cd4234faa4a08bab8115eed210L135 last one, I think (sam_merge2 is on two lines, the first "broken link in toolshed", the second looks more correct.)

[jmchilton]

I think (sam_merge2 is on two lines, the first "broken link in toolshed", the second looks more correct.)

It looks like it already had an entry - so I think we're fine to just delete it.

[bgruening]

Thanks @jmchilton