Pure python rewrite #305
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| tags: [v*] | |
| pull_request: {} | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Run pre-commit linting | |
| run: pipx run pre-commit run --all-files | |
| test: | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| platform: [ubuntu-latest, windows-latest, macos-latest] | |
| include: | |
| - python-version: "3.9" | |
| platform: ubuntu-latest | |
| - python-version: "3.13" | |
| platform: ubuntu-latest | |
| exclude: | |
| # getting segfaults on _get_coefficients... | |
| # probably related to the recursion limit | |
| - python-version: "3.10" | |
| platform: macos-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v4 | |
| with: | |
| version: "0.5.10" | |
| enable-cache: true | |
| cache-dependency-glob: "pyproject.toml" | |
| python-version: ${{ matrix.python-version }} | |
| - name: add gurobi license | |
| shell: bash | |
| id: write-license | |
| env: | |
| LICENSE: ${{ secrets.GRB_LICENSE_FILE }} | |
| run: | | |
| echo "$LICENSE" > $PWD/gurobi.lic | |
| echo "grb_license_file=$PWD/gurobi.lic" >> $GITHUB_OUTPUT | |
| - name: Set up Python | |
| run: uv python install | |
| - name: Install the project | |
| run: uv sync --extra test | |
| - name: run tests | |
| run: uv run pytest --color yes -v --cov ilpy --cov-report=xml | |
| env: | |
| GRB_LICENSE_FILE: ${{ steps.write-license.outputs.grb_license_file }} | |
| - name: upload coverage | |
| uses: codecov/codecov-action@v5 | |
| test-motile: | |
| uses: pyapp-kit/workflows/.github/workflows/test-dependents.yml@v2 | |
| with: | |
| dependency-repo: funkelab/motile | |
| dependency-extras: "test" | |
| python-version: "3.11" | |
| deploy: | |
| needs: test | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: 👷 Build | |
| run: pipx run build | |
| - name: 🚢 Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| - uses: softprops/action-gh-release@v2 | |
| with: | |
| generate_release_notes: true | |
| files: "./dist/*" |