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9 Open 23 Closed
9 Open 23 Closed
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Issues list

rseq.smk - BAM index file paths are incorrect (causing occasional crashes with junction_saturation.py)
#59 opened May 24, 2024 by SamBryce-Smith
1
1
conda instead of mamba
#57 opened Mar 6, 2024 by mattzano
DESEQ2 snakemake rule runs every comparison in the comparisons.yaml everytime it runs
#56 opened Jan 23, 2023 by aleighbrown
@YixuanWan
use of conda has us approaching file limits
#55 opened Jan 18, 2023 by aleighbrown
2
Refine minimal QC modules and reporting
#38 opened Apr 19, 2022 by SamBryce-Smith
@SamBryce-Smith
Move to snakemake profiles for cluster submission and job logs to main output dir not submissions low priority
#30 opened Jun 25, 2021 by SamBryce-Smith
@SamBryce-Smith
Test data bundled with repo to cover all permutations
#27 opened Jun 24, 2021 by SamBryce-Smith
@aleighbrown
2
Option to create (strand-specific) coverage bigwigs enhancement New feature or request low priority
#14 opened Jan 14, 2021 by SamBryce-Smith
1
Make schema for sample_table.csv to try and catch layout errors enhancement New feature or request low priority
#8 opened Oct 22, 2020 by SamBryce-Smith
@SamBryce-Smith
ProTip! Adding no:label will show everything without a label.