Labrador v0.3 includes a range of updates that have mostly been contributed by @darogan and @StevenWingett who have been using Labrador at other centres beyond the fair shores of the Babraham Institute.
- Updated documentation on how to run Labrador using a webserver inside a Docker container
- Improved
sendmailsetup - Updated instructions to use a new config file to setupsendmail. - Added Docker container instructions - Updated the documentation to provide instructions on how to run Labrador inside a Docker container.
- Fix invalid filenames before writing SRA links file
- Fix the data dir permissions problem
- Make dataset lookups work for GEO accessions again
- Make new project directories get
777permissions - Symlink based failure fixes
- Conditional statements wrapped around
dfcheck and logo, plus removed custom images from img - Simplified and tidied up the use of config variables for data and server locations
- Add a conditional for testing the storage situation on local server
- Implemented samtools path check, replace
zcatwithgunzip -cfor OSX compatibility - Fixed minor variable formatting in
header.php - Added a samtools path variable for setting in the config if required
- Remove hard coded links to be more generic for main Labrador repo
- Added PHPExcel and ParseDown submodules
- Added support for markdown reports
- PHP7 Compatability updates to split function in
files.php, plus minor formatting - Added PDF viewer to reports
- Base version customised for generic NGS projects
- Cleaned up datasets page a bit.
- Added last modified dates to homepage and datasets pages.
- Fixed datatables error on homepage.
- Got SRA links modal to work with selected table rows.
- Added option to save file list to server.
- Removed links to 'processing' page. Made javascript SRA links download. Added datatables.
- Updated
mysql_tomysqli_