Merge pull request #24 from StevenWingett/master

Added a CHANGELOG

CHANGELOG.md

@@ -0,0 +1,55 @@
+# Labrador Version History
+
+## Labrador v0.3 (16 March 2021)
+
+Labrador v0.3 includes a range of updates that have mostly been contributed by @darogan and @StevenWingett who have been using Labrador at other centres beyond the fair shores of the Babraham Institute.
+
+* Updated documentation on how to run Labrador using a webserver inside a Docker container
+* Improved `sendmail` setup - Updated instructions to use a new config file to setup `sendmail`.
+* Added Docker container instructions - Updated the documentation to provide instructions on how to run Labrador inside a Docker container.
+* Fix invalid filenames before writing SRA links file
+* Fix the data dir permissions problem
+* Make dataset lookups work for GEO accessions again
+* Make new project directories get `777` permissions
+* Symlink based failure fixes
+* Conditional statements wrapped around `df` check and logo, plus removed custom images from img
+* Simplified and tidied up the use of config variables for data and server locations
+* Add a conditional for testing the storage situation on local server
+* Implemented samtools path check, replace `zcat` with `gunzip -c` for OSX compatibility
+* Fixed minor variable formatting in `header.php`
+* Added a samtools path variable for setting in the config if required
+* Remove hard coded links to be more generic for main Labrador repo
+* Added PHPExcel and ParseDown submodules
+* Added support for markdown reports
+* PHP7 Compatability updates to split function in `files.php`, plus minor formatting
+* Added PDF viewer to reports
+* Base version customised for generic NGS projects
+* Cleaned up datasets page a bit.
+* Added last modified dates to homepage and datasets pages.
+* Fixed datatables error on homepage.
+* Got SRA links modal to work with selected table rows.
+* Added option to save file list to server.
+* Removed links to 'processing' page. Made javascript SRA links download. Added datatables.
+* Updated `mysql_` to `mysqli_`
+
+## Labrador v0.2 (22 January 2014)
+
+
+### New Features
+
+- Custom accession numbers
+- Labrador now checks for available updates
+- Enter an e-mail address in the search bar to show projects associated 
+with that user Updates
+- Number of e-mails sent when adding projects and datasets cut down if 
+you're an admin
+- Documentation - described how to set up Sendmail for the PHP mail() 
+function
+
+### Bug fixes
+
+- You can now add new papers whilst editing an existing project
+- Number of new datasets in e-mail notifications is now correct
+- Retrieving an accession when editing a project no longer warns you that 
+it exists
+- Minor formatting fixes