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Sphinx: fix code samples (instantiation and naming of System()) (#3542)
Description of changes: - `lb.rst` contained outdated code for instantiating the `System`-class, namely missing the mandatory `box_l` parameter, only trying to set it afterwards. - Fixed that there and in all other places that I found via a quick search. - While at it, I renamed the occurrences of instances of `System` that were not called `system`, to match the naming convention of #1845.
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