v0.11.5

Fixed

• ValueError: invalid literal for int() with base 10 in base_yield_plot

Changed

• Clarify SeqSummary read alignment title and axis label.

v0.11.4

Fixed

• Added setuptools to conda package requirements to unbreak package distribution.

Added

• Added setuptools to python package requirements as it is required for runtime use of pkg_resources.

v0.11.3

Fixed

• load_modkit_summary function shows the threshold value of any modified base.

Changed

• SeqSummary dropdown menu shows samples in order.
• Seqviz plot now displays enzymes in a multi-select box.

Added

• additional_styles dictionary parameter to allow more style options of div in EZchart()
• SeqSummary read_length_plot binwidth can be overridden from default.

v0.11.2

Changed

• Bokeh plots featuring more than one data series will automatically have a legend.

Fixed

• Tooltips not displaying meaningful values.

v0.11.1

Changed

• Hide service workflow parameters from ParamsTable.

v0.11.0

Changed

• Bumped minor version as 0.10.2 should have been 0.11.0.

Fixed

• Transparent lines/points plotted in relational plots.
• Add hover back to bokeh toolbox.
• SeqCompare not working with histograms and line charts from BokehPlots.

Removed

• BcftoolsStats component until it is updated to use BokehPlot.

v0.10.2

Changed

• Now uses Bokeh as plotting backend for histplot(), lineplot() and scatterplot().
• Reduced some padding and margins to make the report more compact.

Fixed

• Sankey top rank (superkingdom) counts being affected by subrank filtering.
• Sankey samples in dropdown now appear in alphabetical order.

Added

• PlotMetaData function to plot barcharts using a JSON file of nextflow workflow metadata.

v0.10.1

Fixed

• The maximum read length reported in the sub-title of components.fastcat.read_length_plot() being one bp too large.

Changed

• Data types in demo changed to dropdown list.
• MSA now accepts start and end co-ordinates for partial sequence visualisation.

v0.10.0

Added

• MSA visualisation with pymsaviz
• Plasmid visualisation with seqviz

v0.9.2

Changed

• Navigation bar links now replaced with a dropdown list of links to sections on the report.