DAOS-16100 test: Fix stopping daos_test during timeout #15275

phender · 2024-10-08T17:44:45Z

Fix stopping timed out processes run by a JobManager class by only
searching for and killing the command executable being run by clush,
orterun, mpirun, etc. Add a new harness/cmocka.py test to verify the
stopping of the processes with a test timeout.

Skip-unit-tests: true
Skip-fault-injection-test: true
Test-tag: test_daos_management

Required-githooks: true

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Commit messages follows the guidelines outlined here.
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Gatekeeper:

Properly dstop the daos_test process if the test encounters a timeout while running. Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: test_daos_management Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

github-actions · 2024-10-08T17:45:06Z

Ticket title is 'daos_test/suite.py:DaosCoreTest.test_daos_degraded_ec - cart_ctl error due to errored rank 0'
Status is 'In Review'
Labels: '2.6.0rc1,ci_impact,pr_test,tcp_provider,testp2'
https://daosio.atlassian.net/browse/DAOS-16100

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: test_daos_management Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-10-24T10:16:42Z

Test stage Functional Hardware Medium Verbs Provider completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/2/execution/node/938/log

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: test_daos_management Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-10-26T23:24:20Z

Test stage Functional Hardware Medium Verbs Provider completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/4/execution/node/938/log

When stopping cmocka commands only use the executable name to find a pkill match. Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-10-28T23:19:01Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/5/execution/node/800/log

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-10-30T19:13:11Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/7/execution/node/826/log

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management MultiEnginesPerSocketTest FaultDomain Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-10-30T20:23:57Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/9/execution/node/826/log

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management MultiEnginesPerSocketTest FaultDomain Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-10-30T22:19:18Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/10/execution/node/825/log

daosbuild1 · 2024-10-30T22:31:37Z

Test stage Functional Hardware Medium Verbs Provider completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/10/execution/node/1063/log

daosbuild1 · 2024-10-30T22:33:30Z

Test stage Functional Hardware Large completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/10/execution/node/1126/log

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management MultiEnginesPerSocketTest FaultDomain Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-10-30T23:23:26Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com/job/daos-stack/job/daos/job/PR-15275/11/display/redirect

daosbuild1 · 2024-10-31T01:53:58Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/12/execution/node/826/log

daosbuild1 · 2024-10-31T03:01:42Z

Test stage Functional Hardware Large completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/12/execution/node/1034/log

daosbuild1 · 2024-10-31T03:19:49Z

Test stage Functional Hardware Medium Verbs Provider completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/12/execution/node/1080/log

daosbuild1 · 2024-11-07T01:14:18Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/18/execution/node/825/log

daosbuild1 · 2024-11-07T22:56:32Z

Test stage Functional Hardware Medium completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/18/execution/node/1033/log

daosbuild1 · 2024-11-08T01:17:10Z

Test stage Functional Hardware Medium Verbs Provider completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/18/execution/node/1087/log

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-11-08T23:15:27Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/19/execution/node/825/log

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-11-21T22:14:52Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/20/execution/node/825/log

phender · 2024-11-21T22:28:57Z

FYI, created https://daosio.atlassian.net/browse/DAOS-16825 to address using register cleanup to stop agents/servers independently of this ticket.

Remove stopping agents when stopping servers as DAOS-6873 is resolved. Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest ConfigGenerateRun Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-11-22T16:58:10Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/21/execution/node/825/log

phender · 2024-11-25T19:49:31Z

FYI, created https://daosio.atlassian.net/browse/DAOS-16825 to address using register cleanup to stop agents/servers independently of this ticket.

Waiting on #15530 to merge before continuing with this PR.

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

daosbuild1 · 2024-11-26T01:36:38Z

Test stage Functional on EL 8.8 completed with status FAILURE. https://build.hpdd.intel.com//job/daos-stack/job/daos/view/change-requests/job/PR-15275/23/execution/node/826/log

phender · 2024-11-26T14:13:04Z

The 7 failures in https://build.hpdd.intel.com/job/daos-stack/job/daos/job/PR-15275/23/testReport/ are expected:

The 1-./harness/cmocka.py:HarnessCmockaTest.test_no_cmocka_xml test verifies launch.py detects a missing cmocka file (1 failure)
The 2-./harness/cmocka.py:HarnessCmockaTest.test_clush_manager_timeout test purposely times out and verifies launch.py detects a missing cmocka file (2 failures)
The 3-./harness/cmocka.py:HarnessCmockaTest.test_orterun_manager_timeout test purposely times out and verifies launch.py detects a missing cmocka file (2 failures)
The 4-./harness/cmocka.py:HarnessCmockaTest.test_mpirun_manager_timeout test purposely times out and verifies launch.py detects a missing cmocka file (2 failures)

This test is not tagged to run in normal pr or timed runs, but was added as part of this PR to verify commands run by JobManager based classes are properly stopped during test timeouts.

phender · 2024-11-26T17:11:34Z

Sample log from 4-./harness/cmocka.py:HarnessCmockaTest.test_mpirun_manager_timeout where tearDown now stops the command being run by the JobManager class:

2024-11-26 00:21:15,659 stacktrace       L0045 ERROR| RuntimeError: Test interrupted by SIGTERM
2024-11-26 00:21:15,659 stacktrace       L0046 ERROR| 
2024-11-26 00:21:15,660 test             L0772 DEBUG| Local variables:
2024-11-26 00:21:15,718 test             L0775 DEBUG|  -> self <class 'cmocka.HarnessCmockaTest'>: 4-./harness/cmocka.py:HarnessCmockaTest.test_mpirun_manager_timeout;run-4712
2024-11-26 00:21:15,718 test             L0357 INFO | ====================================================================================================
2024-11-26 00:21:15,719 test             L0471 INFO | ==> Step 1: tearDown(): Called due to exceeding the 10s test timeout [elapsed since last step: 10.16s]
2024-11-26 00:21:15,719 test             L0369 INFO | test execution has been terminated by avocado
2024-11-26 00:21:15,719 test             L0402 DEBUG| Register: 1 cleanup methods detected
2024-11-26 00:21:15,719 test             L0409 DEBUG| [1] Register: Calling cleanup method stop_job_manager(job_manager=/usr/lib64/mpich/bin/mpirun -hostfile /tmp/hostfile_nrw0ked9 -np 1 sleep 60)
2024-11-26 00:21:15,719 job_manager_util L0085 INFO | Stopping mpirun job manager: /usr/lib64/mpich/bin/mpirun -hostfile /tmp/hostfile_nrw0ked9 -np 1 sleep 60
2024-11-26 00:21:15,720 run_utils        L0570 DEBUG| Searching for any processes on wolf-102vm1 that match 'sleep 60'
2024-11-26 00:21:15,723 run_utils        L0471 DEBUG| Running on wolf-102vm1 with a 60 second timeout: /usr/bin/pgrep --list-full --full -x 'sleep 60'
2024-11-26 00:21:16,102 run_utils        L0335 DEBUG|   wolf-102vm1 (rc=0): 42585 sleep 60
2024-11-26 00:21:16,104 run_utils        L0594 DEBUG| Killing any processes on wolf-102vm1 that match 'sleep 60' and then waiting 5 seconds
2024-11-26 00:21:16,105 run_utils        L0471 DEBUG| Running on wolf-102vm1 with a 60 second timeout: sudo /usr/bin/pkill --full -x 'sleep 60'
2024-11-26 00:21:16,500 process          L0416 DEBUG| [stdout] 
2024-11-26 00:21:16,501 process          L0416 DEBUG| [stdout] ===================================================================================
2024-11-26 00:21:16,502 process          L0416 DEBUG| [stdout] =   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
2024-11-26 00:21:16,502 process          L0416 DEBUG| [stdout] =   PID 42585 RUNNING AT wolf-102vm1
2024-11-26 00:21:16,502 process          L0416 DEBUG| [stdout] =   EXIT CODE: 15
2024-11-26 00:21:16,502 process          L0416 DEBUG| [stdout] =   CLEANING UP REMAINING PROCESSES
2024-11-26 00:21:16,503 process          L0416 DEBUG| [stdout] =   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
2024-11-26 00:21:16,503 process          L0416 DEBUG| [stdout] ===================================================================================
2024-11-26 00:21:16,503 process          L0416 DEBUG| [stdout] YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Terminated (signal 15)
2024-11-26 00:21:16,505 process          L0416 DEBUG| [stdout] This typically refers to a problem with your application.
2024-11-26 00:21:16,507 run_utils        L0333 DEBUG|   wolf-102vm1 (rc=0): <no output>
2024-11-26 00:21:16,509 process          L0416 DEBUG| [stdout] Please see the FAQ page for debugging suggestions
2024-11-26 00:21:21,513 run_utils        L0471 DEBUG| Running on wolf-102vm1 with a 60 second timeout: /usr/bin/pgrep --list-full --full -x 'sleep 60'
2024-11-26 00:21:26,903 run_utils        L0333 DEBUG|   wolf-102vm1 (rc=1): <no output>
2024-11-26 00:21:26,904 run_utils        L0605 DEBUG| All processes running on wolf-102vm1 that match 'sleep 60' have been stopped.
2024-11-26 00:21:26,905 job_manager_util L0337 INFO | ***At least one remote 'sleep 60' process needed to be killed on wolf-102vm1! Please investigate/report.***

daltonbohning

Just nits

daltonbohning · 2024-11-26T17:27:02Z

src/tests/ftest/util/cmocka_utils.py

+                killed.
+            executable (str): the command executable. Also the string used to search for the process
+                when it is killed.
+            keywords (list): list of words used to mark the command as failed if any are found in


Should we call keywords check_results to be consistent?

Yeah, it's not a bad idea.

daltonbohning · 2024-11-26T17:30:39Z

src/tests/ftest/util/command_utils.py

@@ -72,6 +72,9 @@ def __init__(self, namespace, command, path="", subprocess=False, check_results=
        # used to check on the progress or terminate the command.
        self._exe_names = [self.command]

+        # If set use the full command string when returning the 'command_regex' property
+        self.full_command_regex = False


Nit: since command_regex already exists and is a string, full_command_regex implies this is some sort of "full" version of command_regex. It's more verbose but I'd recommend something like use_full_command_regex or similar so the variable name reflects that it's a bool and not a string / "full" version

I do prefer use_full_command_regex in this context.

daltonbohning · 2024-11-26T17:32:32Z

src/tests/ftest/util/job_manager_utils.py

+        if self.job.full_command_regex:
+            regex = f"'{str(self.job)}'"


To my previous point, the variable name implies this should be (which is wrong)

Suggested change

if self.job.full_command_regex:

regex = f"'{str(self.job)}'"

if self.job.full_command_regex:

regex = self.job.full_command_regex

Right, using self.job.use_full_command_regex would make more sense.

daltonbohning · 2024-11-26T17:37:38Z

src/tests/ftest/util/run_utils.py

@@ -542,6 +544,11 @@ def stop_processes(log, hosts, pattern, verbose=True, timeout=60, exclude=None,
        force (bool, optional): if set use the KILL signal to immediately stop any running
            processes. Defaults to False which will attempt to kill w/o a signal, then with the ABRT
            signal, and finally with the KILL signal.
+        full_command (bool, optional): if set match the pattern using the full command with


Same recommendation

Suggested change

full_command (bool, optional): if set match the pattern using the full command with

use_full_command (bool, optional): if set match the pattern using the full command with

In the context of this method, where full_command is indicating if the pattern is part of a command or the entire (full) command, I'm not sure we need use_full_command. If anything, it's more like match_full_pattern.

match_full_pattern could work too. But full_command isn't as misleading in this context, compared to the others

daltonbohning · 2024-11-26T17:46:04Z

src/tests/ftest/util/run_utils.py

+    # Catch any attempt to kill process 1.
+    if "1" in re.findall(r"^(\d+)\s+", result.joined_stdout, re.MULTILINE):
+        raise ValueError(f"Attempting to kill process 1 as a match for {pattern}!")


Just FYI if you wanted to avoid regex. But safer to just stick with what you have

if any(map(lambda line: line == '1', list_of_things_to_search))

Wouldn't the list_of_things_to_search need to be just the pids from result.joined_stdout - which is what the regex provides?

Yeah, it would need to be a list of just the pids. It's really a matter of dealing with a regex like r"^(\d+)\s+" or using lambda or list comprehension.
"1" in ... r"^(\d+)\s+" effectively means "1" == line

Fix stopping timed out processes run by a JobManager class by only searching for and killing the command executable being run by clush, orterun, mpirun, etc. Add a new harness/cmocka.py test to verify the stopping of the processes with a test timeout. Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Signed-off-by: Phil Henderson <[email protected]>

Fix stopping timed out processes run by a JobManager class by only searching for and killing the command executable being run by clush, orterun, mpirun, etc. Add a new harness/cmocka.py test to verify the stopping of the processes with a test timeout. Signed-off-by: Phil Henderson <[email protected]>

phender requested review from a team as code owners October 8, 2024 17:44

phender marked this pull request as draft October 8, 2024 17:44

phender added 2 commits October 23, 2024 12:08

Merge branch 'master' into pahender/DAOS-16100

1129c26

Force a timeout for debug.

71a4142

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: test_daos_management Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

phender added 2 commits October 24, 2024 08:43

Force test timeout

cb91989

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: test_daos_management Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

Force timeout

6c05d56

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: test_daos_management Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

phender added 2 commits October 28, 2024 13:42

Merge branch 'master' into pahender/DAOS-16100

9151aad

phender added 2 commits October 30, 2024 14:34

Updates.

456f256

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

Cleanup.

c366c64

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

phender added 2 commits October 30, 2024 15:46

phender added 2 commits October 30, 2024 19:04

Updates.

34fc71b

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: DaosCoreTestDfs DaosCoreTestDfuse harness_cmocka test_daos_management MultiEnginesPerSocketTest FaultDomain Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

phender added 2 commits November 8, 2024 15:26

Merge branch 'master' into pahender/DAOS-16100

b959c10

Only match exact full commands if requested in stop_processes.

a6ff5d2

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

phender added 2 commits November 21, 2024 14:44

Merge branch 'master' into pahender/DAOS-16100

837179f

Remove register clanup calls for agent/server stop.

2eaace2

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

phender added 2 commits November 25, 2024 18:11

Merge branch 'master' into pahender/DAOS-16100

e723878

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

Fix merge.

34711e4

Skip-unit-tests: true Skip-fault-injection-test: true Test-tag: pr daos_test dfuse_test test_load_mpi HarnessCmockaTest Allow-unstable-test: true Required-githooks: true Signed-off-by: Phil Henderson <[email protected]>

phender marked this pull request as ready for review November 26, 2024 14:13

phender requested review from shimizukko and dinghwah November 26, 2024 14:13

phender added the forced-landing The PR has known failures or has intentionally reduced testing, but should still be landed. label Nov 26, 2024

phender requested a review from mjean308 November 26, 2024 17:08

daltonbohning approved these changes Nov 26, 2024

View reviewed changes

mjean308 approved these changes Nov 26, 2024

View reviewed changes

phender requested a review from a team November 26, 2024 21:27

daltonbohning merged commit 1eda125 into master Nov 26, 2024
44 of 48 checks passed

daltonbohning deleted the pahender/DAOS-16100 branch November 26, 2024 21:35

	full_command (bool, optional): if set match the pattern using the full command with
	use_full_command (bool, optional): if set match the pattern using the full command with

DAOS-16100 test: Fix stopping daos_test during timeout #15275

DAOS-16100 test: Fix stopping daos_test during timeout #15275

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