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@daklab

Knowles lab @ NYGC/ColumbiaU

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  1. tiger tiger Public

    Python 11 5

  2. LeafletSC LeafletSC Public

    Leaflet is a probabilistic model that identifies latent cell states defined by splicing changes.

    Jupyter Notebook 10 1

  3. isoviz isoviz Public

    isoviz is a package that allows for simplified junction to transcript level visualization with Cas13 gRNA design capability.

    HTML 4

  4. daklab.github.io daklab.github.io Public

    Forked from davidaknowles/davidaknowles.github.io

    Github Pages homepage

    HTML 1

  5. MungeSumstats MungeSumstats Public

    Forked from Al-Murphy/MungeSumstats

    Rapid standardisation and quality control of summary statistics from GWAS

    R

  6. seabass seabass Public

    Jupyter Notebook

Repositories

Showing 10 of 12 repositories
  • daklab.github.io Public Forked from davidaknowles/davidaknowles.github.io

    Github Pages homepage

    daklab/daklab.github.io’s past year of commit activity
    HTML 1 4 0 0 Updated Dec 4, 2024
  • gruyere Public

    Genome-wide Rare Variant EnRichment Evaluation

    daklab/gruyere’s past year of commit activity
    Python 0 0 0 0 Updated Nov 9, 2024
  • LeafletFA Public

    A probabilistic factor model for learning RNA splicing driven cell states in single cell RNA-seq data

    daklab/LeafletFA’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 4, 2024
  • parmigiano Public

    Probabilistic Analysis of Rare variants Modeled In Genome-wIde ANnotation-informed Overdispersion test

    daklab/parmigiano’s past year of commit activity
    Python 0 0 0 0 Updated Oct 27, 2024
  • leafcutter2_testing Public Forked from davidaknowles/leafcutter

    Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

    daklab/leafcutter2_testing’s past year of commit activity
    R 0 Apache-2.0 115 0 0 Updated Jul 31, 2024
  • poolqtl Public
    daklab/poolqtl’s past year of commit activity
    Jupyter Notebook 0 3 0 0 Updated May 29, 2024
  • LeafletSC Public

    Leaflet is a probabilistic model that identifies latent cell states defined by splicing changes.

    daklab/LeafletSC’s past year of commit activity
    Jupyter Notebook 10 MIT 1 0 0 Updated May 10, 2024
  • isoviz Public

    isoviz is a package that allows for simplified junction to transcript level visualization with Cas13 gRNA design capability.

    daklab/isoviz’s past year of commit activity
    HTML 4 0 0 0 Updated Mar 25, 2024
  • variancePartition_leafcutter_extension Public Forked from GabrielHoffman/variancePartition

    Quantify and interpret divers of variation in multilevel splicing experiments

    daklab/variancePartition_leafcutter_extension’s past year of commit activity
    R 0 14 0 0 Updated Oct 25, 2023
  • tiger Public
    daklab/tiger’s past year of commit activity
    Python 11 5 0 0 Updated Sep 18, 2023
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