LP.8.1 gained S:K679R (45, 8 Places , 11 airport samples from four different countries Philippines, Australia, Japan,Malaysia) with a S:A475V sublineage (5)

[FedeGueli]

Transferred from sars-cov-2-variants/lineage-proposals#2199

LP.8.1 >> T5122C, ORF1a:L3667F (G11266T), ,Orf1a:T2846I (C8802T),Orf1b:V1649I (G18412A), S:K679R (A23598G), N:A152V (C28728T)
Query for LP.8.1 + 679R: A23598G, G22132T, C22120A by @xz-keg
Samples: 33
Places :Canada (16, 3 provinces ), Philippines (4 GBW), Hong Kong (4), Australia (3, 2 States + 1GBW) , Singapore (2), Japan (2, GBW ), New Zealand, Taiwan (traveler from abroad)

With a sub branch with S:P85S
#2834 >> C14235T > S:P85S (C21815T)
Query: C14235T,C21815T,T3565C
Samples:6
Places: Canada(2 Provinces), US(NY)

with a sub branch found by @cvejris with S:A475V and a further sub branch with S:A653V and S:P217L
#2834 >> , S:A475V (C22986T),>> S:A653V (C23520T), S:P217L (C22212T)
Query for 679R + 475V:C22986T,A23598G,G22132T (new)
Samples: 5 : Canada (3), Philippines (2 GBW)
Query for 679R,217L,475V,653V: C22212T, C22986T, C23520T
Samples: 3 British Columbia
Tree:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_3cf32_39d80.json?f_userOrOld=uploaded%20sample&label=id:node_7412134

[FedeGueli]

35 now cc @corneliusroemer

[Over-There-Is]

Most of Taiwan/CDC-F are local. Since 03-22, the travelling history of Taiwanese samples are no more provided, all samples are labeled "Patient infected while traveling in unknow" instead. Before then, local cases and imported cases from Mainland, HK or Macao are named as CDC-Fxxxxx, and imported cases out of "Greater China area" are named as CDC-Wxxxxx.

[FedeGueli]

Most of Taiwan/CDC-F are local. Since 03-22, the travelling history of Taiwanese samples are no more provided, all samples are labeled "Patient infected while traveling in unknow" instead. Before then, local cases and imported cases from Mainland, HK or Macao are named as CDC-Fxxxxx, and imported cases out of "Greater China area" are named as CDC-Wxxxxx.

Thx vm i didnt know that.

[FedeGueli]

Added a S:P85S sub branch now detected outside Canada

[FedeGueli]

37 Aus, NY

[FedeGueli]

41 w GBW from Malaysia and Philippines.
@corneliusroemer i think this should be designated.

[cvejris]

41 w GBW from Malaysia and Philippines. @corneliusroemer i think this should be designated.

One of the Philippinean samples has - surprise surprise - S:A475V. Plus private Orf1a:D335G (A1269G), Orf1a:I1040F (A3383T), C7420T, Orf3a:T24I (C25463T), N:L161H (T28755A)

[FedeGueli]

41 w GBW from Malaysia and Philippines. @corneliusroemer i think this should be designated.

One of the Philippinean samples has - surprise surprise - S:A475V. Plus private Orf1a:D335G (A1269G), Orf1a:I1040F (A3383T), C7420T, Orf3a:T24I (C25463T), N:L161H (T28755A)

Yes thx already added now it clusters with the canadian 475V branch

[FedeGueli]

LP.8.1.1 via 49e5731

i would like reopening it to track sublineages for a while ( it comes from a multiple branch issue where it is harder to track sublineages) cc @corneliusroemer

[cvejris]

First LP.8.1.1 in Europe (England): EPI_ISL_19603042

[FedeGueli]

First LP.8.1.1 in Europe (England): EPI_ISL_19603042

Thx!

[cvejris]

EPI_ISL_19611427 (USA, Ohio) is LP.8.1.1+ private S:L5F (C21575T), I434V (A22862G), Orf1a: I2286T (T7122C)

[FedeGueli]

EPI_ISL_19611427 (USA, Ohio) is LP.8.1.1+ private S:L5F (C21575T), I434V (A22862G), Orf1a: I2286T (T7122C)

Rbd back in the game, we will see

[FedeGueli]

EPI_ISL_19611427 (USA, Ohio) is LP.8.1.1+ private S:L5F (C21575T), I434V (A22862G), Orf1a: I2286T (T7122C)

i will track LP.8.1.1 sublineages in sars-cov-2-variants/lineage-proposals#2199
already added this one and the ones previously tracked here