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As expected where CH.1.1 reached early high prevalence (Uk,Aus,Den,SIngapore) there it has evolved in the most interesting ways.
While no CH.1.1 lineage seems able to compete with the XBBers army i want to propose here a new sublineage with a large advantage over parental CH.1.1.
it belongs to the big CH.1.1 branch with C21811T ( as CH.1.1.12, FK.1 and other important sublineages)
As expected where CH.1.1 reached early high prevalence (Uk,Aus,Den,SIngapore) there it has evolved in the most interesting ways.
While no CH.1.1 lineage seems able to compete with the XBBers army i want to propose here a new sublineage with a large advantage over parental CH.1.1.
it belongs to the big CH.1.1 branch with C21811T ( as CH.1.1.12, FK.1 and other important sublineages)
Defining mutations:
CH.1.1 >> >C21811T>C193T> A24772G >S:T323K ( C22530A)
Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_20f6c_1b8830.json?label=id:node_8158277
Gisaid query: C21811T,C193T, A24772G , C22530A
Sequences: 37 Gisaid (41 on Usher)
EPI_ISL_16484346, EPI_ISL_16515651, EPI_ISL_16978272,
EPI_ISL_16996419, EPI_ISL_17029562, EPI_ISL_17030854,
EPI_ISL_17097290, EPI_ISL_17098497, EPI_ISL_17098513,
EPI_ISL_17098525-17098526, EPI_ISL_17165076, EPI_ISL_17178506,
EPI_ISL_17178508, EPI_ISL_17178613, EPI_ISL_17198927,
EPI_ISL_17233516, EPI_ISL_17241840, EPI_ISL_17242167,
EPI_ISL_17245519, EPI_ISL_17245726, EPI_ISL_17245978,
EPI_ISL_17256971, EPI_ISL_17347504, EPI_ISL_17347509,
EPI_ISL_17347514, EPI_ISL_17363285, EPI_ISL_17372861,
EPI_ISL_17372885, EPI_ISL_17372902, EPI_ISL_17372979,
EPI_ISL_17373034, EPI_ISL_17382351, EPI_ISL_17412318,
EPI_ISL_17416768, EPI_ISL_17423304, EPI_ISL_17423366,
Countries:
Growth advantage versus parental lineage:
https://cov-spectrum.org/explore/United%20Kingdom/AllSamples/Past3M/variants?nextcladePangoLineage=CH.1.1*&aaMutations1=S%3AT323K&nextcladePangoLineage1=CH.1.1*&analysisMode=CompareToBaseline&
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