Collect Issue-Milestones #433
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| name: Collect Issue-Milestones | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 3 * * *' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SCRIPT_NAME: Issue Milestone Collector | |
| SCRIPT_DIR: scripts/issue-milestone-collector | |
| ALIAS_MAPPING_JSON: pango_designation/alias_key.json | |
| DATA_DIR: data | |
| STREAM_NAME: github-api-milestones | |
| STREAM_DIR: github-artifacts/api-payload | |
| MAPPING_NAME: mappings | |
| MAPPING_DIR: github-artifacts/mappings | |
| COMMIT_MESSAGE: Update via Issue Milestone Collector | |
| COMMIT_AUTHOR: Issue Milestone Collector | |
| COMMIT_AUTHOR_EMAIL: "[email protected]" | |
| concurrency: | |
| group: single-workflow | |
| cancel-in-progress: true | |
| jobs: | |
| script-setup: | |
| name: Script Setup | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| ref: master | |
| - name: Create Initial Artifact Files | |
| run: | | |
| mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR | |
| touch $SCRIPT_DIR/{$STREAM_DIR,$MAPPING_DIR}/{cov-lineages_pango-designation,sars-cov-2-variants_lineage-proposals}.json | |
| - name: Upload Stream Artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.STREAM_NAME }} | |
| path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
| - name: Upload Mapping Artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.MAPPING_NAME }} | |
| path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
| github-api-request: | |
| name: GitHub API Request | |
| runs-on: ubuntu-latest | |
| needs: script-setup | |
| concurrency: graphql | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| owner: [cov-lineages, sars-cov-2-variants] | |
| include: | |
| - repository: pango-designation | |
| owner: cov-lineages | |
| - repository: lineage-proposals | |
| owner: sars-cov-2-variants | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| ref: master | |
| - name: Ensure Directory Structure | |
| run: | | |
| mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR | |
| - name: Download Stream Artifacts | |
| uses: actions/[email protected] | |
| with: | |
| name: ${{ env.STREAM_NAME }} | |
| path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
| - name: Download Mappings Artifacts | |
| uses: actions/[email protected] | |
| with: | |
| name: ${{ env.MAPPING_NAME }} | |
| path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
| - name: GitHub CLI GraphQL Request | |
| run: | | |
| cd $SCRIPT_DIR/$STREAM_DIR | |
| gh api graphql \ | |
| --paginate \ | |
| --cache "1h" \ | |
| --header "Accept: application/vnd.github+json" \ | |
| --header "X-GitHub-Api-Version: 2022-11-28" \ | |
| --field owner=${{ matrix.owner }} \ | |
| --field repository=${{ matrix.repository }} \ | |
| --raw-field query=' | |
| query($owner: String!, $repository: String!, $endCursor: String) { | |
| repository(owner: $owner, name: $repository) { | |
| nameWithOwner | |
| milestones(first:100, after: $endCursor) { | |
| pageInfo { | |
| hasNextPage | |
| endCursor | |
| } | |
| nodes { | |
| number | |
| title | |
| progressPercentage | |
| issues(first: 10) { | |
| nodes { | |
| number, | |
| labels(first: 10) { | |
| nodes { | |
| name | |
| } | |
| }, | |
| state, | |
| stateReason | |
| } | |
| } | |
| } | |
| } | |
| } | |
| }' | jq ' | |
| if (. | has("errors")) | |
| then error("GitHub API Error: \(.errors)") | |
| else . end' \ | |
| > ${{ matrix.owner }}_${{ matrix.repository }}.json | |
| echo "Request Finished" | |
| - name: Post-process JSON Stream | |
| run: | | |
| # https://jqplay.org/s/UXZ31kBi_UE All | |
| # https://jqplay.org/s/p1WYXibKnyy Lookup Test | |
| jq --null-input \ | |
| 'def lookup(KEY): | |
| .[KEY] // error("MAPPING ERROR: \(KEY) does not exist within the mapper\nMAPPER:\n\(.)"); | |
| [input | to_entries[] | if (.key == "A" or .key == "B" or (.key | startswith("X"))) then .value = .key else . end] | |
| | sort_by(.key) | from_entries as $mapper | | |
| [inputs | .data.repository | |
| | .nameWithOwner as $repo | |
| | .milestones.nodes | |
| | map(select( | |
| ((.progressPercentage == 100) or ((.progressPercentage != 100) and (.issues.nodes[].labels.nodes[].name | contains("designated")))) | |
| and (.title | contains("withdrawn") | not) | |
| and (.issues.nodes[])) | |
| | (.title | splits(",? +|,")) as $pango | |
| | { | |
| ($pango | sub("^[A-Z]+"; $mapper | lookup($pango | split(".")[0]))): | |
| [ {pango: $pango} | |
| + { $repo, milestone: .number } | |
| + (.issues.nodes[] | | |
| { issue: .number, labels: ([.labels.nodes[].name] | join(", ")), state: .state, reason: .stateReason }) | |
| ] | |
| } | |
| ) | add | |
| ] | add ' \ | |
| $ALIAS_MAPPING_JSON $SCRIPT_DIR/$STREAM_DIR/${{ matrix.owner }}_${{ matrix.repository }}.json \ | |
| > $SCRIPT_DIR/$MAPPING_DIR/${{ matrix.owner }}_${{ matrix.repository }}.json | |
| echo "Request Finished" | |
| - name: Upload Stream Artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.STREAM_NAME }} | |
| path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
| - name: Upload Mapping Artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.MAPPING_NAME }} | |
| path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
| merge-mappings: | |
| runs-on: ubuntu-latest | |
| needs: github-api-request | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 1 | |
| ref: master | |
| - name: Ensure Directory Structure | |
| run: | | |
| mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR $SCRIPT_DIR/$DATA_DIR | |
| # - name: Download Stream Artifacts | |
| # uses: actions/[email protected] | |
| # with: | |
| # name: ${{ env.STREAM_NAME }} | |
| # path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
| - name: Download Mapping Artifacts | |
| uses: actions/[email protected] | |
| with: | |
| name: ${{ env.MAPPING_NAME }} | |
| path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
| - name: Post-process JSON Mappings | |
| run: | | |
| cd $SCRIPT_DIR | |
| # https://jqplay.org/s/hMplWeL4VC5 | |
| jq --null-input \ | |
| '[inputs | to_entries | sort] | add | |
| | map(.value[] + {"unaliased": .key}) | |
| | group_by(.unaliased) | add | unique | sort_by(.repo, .issue) | |
| | group_by(.unaliased) | |
| | map({(.[].unaliased) : [.[]]}) | add' \ | |
| $MAPPING_DIR/*.json \ | |
| > $DATA_DIR/mappings.json | |
| - name: Create TSV | |
| run: | | |
| cd $SCRIPT_DIR | |
| # https://jqplay.org/s/wZi2JJnFp-i | |
| jq --null-input --raw-output \ | |
| '[inputs | to_entries] | add | sort | |
| | map(.value[]) | |
| | [.[] | with_entries( .key |= ascii_upcase ) ] | |
| | (.[0] | keys_unsorted | @tsv), (.[] | . | map(.) | @tsv)' \ | |
| $DATA_DIR/mappings.json \ | |
| > $DATA_DIR/mappings.tsv | |
| - name: Update README.md | |
| run: | | |
| cd $SCRIPT_DIR | |
| # https://jqplay.org/s/yamLR8O_qfT | |
| # https://jqplay.org/s/JSwD4q_mlLI With unaliased | |
| # https://jqplay.org/s/vk554kUteJ4 Functions Test | |
| markdown_table=$(jq --null-input --raw-output \ | |
| 'def chunk(N): | |
| if . | length <= N | |
| then [.] | |
| else ([.[0:N]] + (.[N:] | chunk(N))) | |
| end; | |
| def split_hierarchy(N): | |
| . | split(".") as $split | |
| | $split[0] as $base | |
| | $split[1:] as $hierarchy | |
| | [$base] + if ($split | length > 1) then ([$hierarchy | chunk(N) | map(join(".")) | join(" .")]) else [] end | join("."); | |
| [inputs | to_entries] | add | sort | |
| | map(.value[] + {"lineage": (.key)}) | |
| | map_values(.repo as $repo | . | |
| + {"pango": ("`" + .pango + "`")} | |
| + {"unaliased_split": ("`" + (.unaliased | split_hierarchy(9)) + "`")} | |
| + {"source": (if $repo == "cov-lineages/pango-designation" then "main" else "2nd" end)} | |
| + {"labels": .labels | split(", ") | | |
| (if $repo == "cov-lineages/pango-designation" | |
| then map("https://github.com/\($repo)/labels/\(. | @uri | gsub("\\."; "%2E"))") | join(" ") | |
| else map("[\(.)](https://github.com/\($repo)/labels/\(. | @uri | gsub("\\."; "%2E")))") | join(", ") | |
| end) | |
| } | |
| + {"milestone": ("[⚑ \(.milestone)](https://github.com/\($repo)/milestone/\(.milestone)?closed=1)")} | |
| + {"issue": ("[#\(.issue)\(if .reason == "REOPENED" then " 🔵" elif (.reason | not) then " 🟠" elif .reason == "NOT_PLANNED" then " 🔴" else "" end)](https://github.com/\($repo)/issues/\(.issue))")} | |
| ) as $data | |
| | [["PANGO", "UNALIASED PANGO", "MILESTONE", "ISSUE", "LABELS", "REPO"] | join(" | ")] | |
| + [[":---", ":---", ":---:", ":---:", ":---", ":--"] | join(" | ")] | |
| + ($data | map(.pango + " | " + .unaliased_split + " | " + .milestone + " | " + .issue + " | " + .labels + " | " + .source)) | .[]' \ | |
| $DATA_DIR/mappings.json) | |
| echo -e "$markdown_table" > README.md | |
| - name: Commit and Push | |
| run: | | |
| gitStatus=$(git status --porcelain) | |
| # Check if empty | |
| if [ -z "$gitStatus" ]; then | |
| echo "No changes to commit" | |
| else | |
| echo "Changes detected:" | |
| echo "$gitStatus" | |
| echo | |
| echo "committing..." | |
| git config user.name "$COMMIT_AUTHOR" | |
| git config user.email "$COMMIT_AUTHOR_EMAIL" | |
| git add --all | |
| git commit -a -m "$COMMIT_MESSAGE" | |
| git push | |
| fi | |