Collect Issue-Milestones #429
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name: Collect Issue-Milestones | |
on: | |
workflow_dispatch: | |
schedule: | |
- cron: '0 3 * * *' | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
SCRIPT_NAME: Issue Milestone Collector | |
SCRIPT_DIR: scripts/issue-milestone-collector | |
ALIAS_MAPPING_JSON: pango_designation/alias_key.json | |
DATA_DIR: data | |
STREAM_NAME: github-api-milestones | |
STREAM_DIR: github-artifacts/api-payload | |
MAPPING_NAME: mappings | |
MAPPING_DIR: github-artifacts/mappings | |
COMMIT_MESSAGE: Update via Issue Milestone Collector | |
COMMIT_AUTHOR: Issue Milestone Collector | |
COMMIT_AUTHOR_EMAIL: "[email protected]" | |
concurrency: | |
group: single-workflow | |
cancel-in-progress: true | |
jobs: | |
script-setup: | |
name: Script Setup | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 1 | |
ref: master | |
- name: Create Initial Artifact Files | |
run: | | |
mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR | |
touch $SCRIPT_DIR/{$STREAM_DIR,$MAPPING_DIR}/{cov-lineages_pango-designation,sars-cov-2-variants_lineage-proposals}.json | |
- name: Upload Stream Artifacts | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ env.STREAM_NAME }} | |
path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
- name: Upload Mapping Artifacts | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ env.MAPPING_NAME }} | |
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
github-api-request: | |
name: GitHub API Request | |
runs-on: ubuntu-latest | |
needs: script-setup | |
concurrency: graphql | |
strategy: | |
fail-fast: false | |
matrix: | |
owner: [cov-lineages, sars-cov-2-variants] | |
include: | |
- repository: pango-designation | |
owner: cov-lineages | |
- repository: lineage-proposals | |
owner: sars-cov-2-variants | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 1 | |
ref: master | |
- name: Ensure Directory Structure | |
run: | | |
mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR | |
- name: Download Stream Artifacts | |
uses: actions/[email protected] | |
with: | |
name: ${{ env.STREAM_NAME }} | |
path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
- name: Download Mappings Artifacts | |
uses: actions/[email protected] | |
with: | |
name: ${{ env.MAPPING_NAME }} | |
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
- name: GitHub CLI GraphQL Request | |
run: | | |
cd $SCRIPT_DIR/$STREAM_DIR | |
gh api graphql \ | |
--paginate \ | |
--cache "1h" \ | |
--header "Accept: application/vnd.github+json" \ | |
--header "X-GitHub-Api-Version: 2022-11-28" \ | |
--field owner=${{ matrix.owner }} \ | |
--field repository=${{ matrix.repository }} \ | |
--raw-field query=' | |
query($owner: String!, $repository: String!, $endCursor: String) { | |
repository(owner: $owner, name: $repository) { | |
nameWithOwner | |
milestones(first:100, after: $endCursor) { | |
pageInfo { | |
hasNextPage | |
endCursor | |
} | |
nodes { | |
number | |
title | |
progressPercentage | |
issues(first: 10) { | |
nodes { | |
number, | |
labels(first: 10) { | |
nodes { | |
name | |
} | |
}, | |
state, | |
stateReason | |
} | |
} | |
} | |
} | |
} | |
}' | jq ' | |
if (. | has("errors")) | |
then error("GitHub API Error: \(.errors)") | |
else . end' \ | |
> ${{ matrix.owner }}_${{ matrix.repository }}.json | |
echo "Request Finished" | |
- name: Post-process JSON Stream | |
run: | | |
# https://jqplay.org/s/UXZ31kBi_UE All | |
# https://jqplay.org/s/p1WYXibKnyy Lookup Test | |
jq --null-input \ | |
'def lookup(KEY): | |
.[KEY] // error("MAPPING ERROR: \(KEY) does not exist within the mapper\nMAPPER:\n\(.)"); | |
[input | to_entries[] | if (.key == "A" or .key == "B" or (.key | startswith("X"))) then .value = .key else . end] | |
| sort_by(.key) | from_entries as $mapper | | |
[inputs | .data.repository | |
| .nameWithOwner as $repo | |
| .milestones.nodes | |
| map(select( | |
((.progressPercentage == 100) or ((.progressPercentage != 100) and (.issues.nodes[].labels.nodes[].name | contains("designated")))) | |
and (.title | contains("withdrawn") | not) | |
and (.issues.nodes[])) | |
| (.title | splits(",? +|,")) as $pango | |
| { | |
($pango | sub("^[A-Z]+"; $mapper | lookup($pango | split(".")[0]))): | |
[ {pango: $pango} | |
+ { $repo, milestone: .number } | |
+ (.issues.nodes[] | | |
{ issue: .number, labels: ([.labels.nodes[].name] | join(", ")), state: .state, reason: .stateReason }) | |
] | |
} | |
) | add | |
] | add ' \ | |
$ALIAS_MAPPING_JSON $SCRIPT_DIR/$STREAM_DIR/${{ matrix.owner }}_${{ matrix.repository }}.json \ | |
> $SCRIPT_DIR/$MAPPING_DIR/${{ matrix.owner }}_${{ matrix.repository }}.json | |
echo "Request Finished" | |
- name: Upload Stream Artifacts | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ env.STREAM_NAME }} | |
path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
- name: Upload Mapping Artifacts | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ env.MAPPING_NAME }} | |
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
merge-mappings: | |
runs-on: ubuntu-latest | |
needs: github-api-request | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 1 | |
ref: master | |
- name: Ensure Directory Structure | |
run: | | |
mkdir -p -v $SCRIPT_DIR/$STREAM_DIR $SCRIPT_DIR/$MAPPING_DIR $SCRIPT_DIR/$DATA_DIR | |
# - name: Download Stream Artifacts | |
# uses: actions/[email protected] | |
# with: | |
# name: ${{ env.STREAM_NAME }} | |
# path: ${{ env.SCRIPT_DIR }}/${{ env.STREAM_DIR }} | |
- name: Download Mapping Artifacts | |
uses: actions/[email protected] | |
with: | |
name: ${{ env.MAPPING_NAME }} | |
path: ${{ env.SCRIPT_DIR }}/${{ env.MAPPING_DIR }} | |
- name: Post-process JSON Mappings | |
run: | | |
cd $SCRIPT_DIR | |
# https://jqplay.org/s/hMplWeL4VC5 | |
jq --null-input \ | |
'[inputs | to_entries | sort] | add | |
| map(.value[] + {"unaliased": .key}) | |
| group_by(.unaliased) | add | unique | sort_by(.repo, .issue) | |
| group_by(.unaliased) | |
| map({(.[].unaliased) : [.[]]}) | add' \ | |
$MAPPING_DIR/*.json \ | |
> $DATA_DIR/mappings.json | |
- name: Create TSV | |
run: | | |
cd $SCRIPT_DIR | |
# https://jqplay.org/s/wZi2JJnFp-i | |
jq --null-input --raw-output \ | |
'[inputs | to_entries] | add | sort | |
| map(.value[]) | |
| [.[] | with_entries( .key |= ascii_upcase ) ] | |
| (.[0] | keys_unsorted | @tsv), (.[] | . | map(.) | @tsv)' \ | |
$DATA_DIR/mappings.json \ | |
> $DATA_DIR/mappings.tsv | |
- name: Update README.md | |
run: | | |
cd $SCRIPT_DIR | |
# https://jqplay.org/s/yamLR8O_qfT | |
# https://jqplay.org/s/JSwD4q_mlLI With unaliased | |
# https://jqplay.org/s/vk554kUteJ4 Functions Test | |
markdown_table=$(jq --null-input --raw-output \ | |
'def chunk(N): | |
if . | length <= N | |
then [.] | |
else ([.[0:N]] + (.[N:] | chunk(N))) | |
end; | |
def split_hierarchy(N): | |
. | split(".") as $split | |
| $split[0] as $base | |
| $split[1:] as $hierarchy | |
| [$base] + if ($split | length > 1) then ([$hierarchy | chunk(N) | map(join(".")) | join(" .")]) else [] end | join("."); | |
[inputs | to_entries] | add | sort | |
| map(.value[] + {"lineage": (.key)}) | |
| map_values(.repo as $repo | . | |
+ {"pango": ("`" + .pango + "`")} | |
+ {"unaliased_split": ("`" + (.unaliased | split_hierarchy(9)) + "`")} | |
+ {"source": (if $repo == "cov-lineages/pango-designation" then "main" else "2nd" end)} | |
+ {"labels": .labels | split(", ") | | |
(if $repo == "cov-lineages/pango-designation" | |
then map("https://github.com/\($repo)/labels/\(. | @uri | gsub("\\."; "%2E"))") | join(" ") | |
else map("[\(.)](https://github.com/\($repo)/labels/\(. | @uri | gsub("\\."; "%2E")))") | join(", ") | |
end) | |
} | |
+ {"milestone": ("[⚑ \(.milestone)](https://github.com/\($repo)/milestone/\(.milestone)?closed=1)")} | |
+ {"issue": ("[#\(.issue)\(if .reason == "REOPENED" then " 🔵" elif (.reason | not) then " 🟠" elif .reason == "NOT_PLANNED" then " 🔴" else "" end)](https://github.com/\($repo)/issues/\(.issue))")} | |
) as $data | |
| [["PANGO", "UNALIASED PANGO", "MILESTONE", "ISSUE", "LABELS", "REPO"] | join(" | ")] | |
+ [[":---", ":---", ":---:", ":---:", ":---", ":--"] | join(" | ")] | |
+ ($data | map(.pango + " | " + .unaliased_split + " | " + .milestone + " | " + .issue + " | " + .labels + " | " + .source)) | .[]' \ | |
$DATA_DIR/mappings.json) | |
echo -e "$markdown_table" > README.md | |
- name: Commit and Push | |
run: | | |
gitStatus=$(git status --porcelain) | |
# Check if empty | |
if [ -z "$gitStatus" ]; then | |
echo "No changes to commit" | |
else | |
echo "Changes detected:" | |
echo "$gitStatus" | |
echo | |
echo "committing..." | |
git config user.name "$COMMIT_AUTHOR" | |
git config user.email "$COMMIT_AUTHOR_EMAIL" | |
git add --all | |
git commit -a -m "$COMMIT_MESSAGE" | |
git push | |
fi | |