updating model for pango v1.27 #120
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: hedgehog | |
| on: [push, pull_request] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| run_hedgehog_test: | |
| name: Hedgehog test on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: false | |
| environment-file: environment.yml | |
| activate-environment: piranha | |
| channels: conda-forge,bioconda,defaults | |
| miniforge-version: latest | |
| - name: Install hedgehog | |
| run: pip install -e . | |
| - name: Check hedgehog version | |
| run: hedgehog --version | |
| - name: Run hedgehog with test data | |
| run: hedgehog hedgehog/tests/test.fasta 2>&1 | tee hedgehog.log | |