cmu-delphi · nmdefries · Aug 29, 2024 · Jul 16, 2024 · Jul 23, 2024 · Aug 20, 2024
diff --git a/docs/about_delphi.md b/docs/about_delphi.md
@@ -0,0 +1,15 @@
+---
+title: About Delphi
+nav_order: 60
+has_children: false
+---
+
+# About The Delphi Group
+
+The Delphi Group's mission is to develop the theory and practice of epidemic detection, tracking and forecasting, and their use in decision making, both public and private.
+
+Our vision is to make this technology as useful as weather forecasting is today. 
+
+Find out more about the Delphi Research Group on our <a href="https://delphi.cmu.edu" target="_blank">offical webpage</a>.
+Please read our <a href="https://delphi.cmu.edu/blog" target="_blank">blog</a> for additional news, findings, and musings from the team.
+
diff --git a/docs/api/README.md b/docs/api/README.md
@@ -1,7 +1,7 @@
 ---
 title: Other Endpoints (COVID-19 and Other Diseases)
-nav_order: 3
 has_children: true
+nav_order: 3
 ---
 
 # Other Endpoints (COVID-19 and Other Diseases)
@@ -208,4 +208,4 @@ To access our Epidata API, visit our [Epidata API Client Libraries)](client_libr
 
 # Related Work
 
-Please visit our [related works](related_work.md) page for more information.
+Please visit our [related works](../related_work.md) page for more information.
diff --git a/docs/api/api_keys.md b/docs/api/api_keys.md
@@ -1,7 +1,7 @@
 ---
 title: API Keys
+parent: Epidata API Intro
 nav_order: 1
-has_children: true
 ---
 
 # Epidata API Keys

diff --git a/docs/api/cdc.md b/docs/api/cdc.md
@@ -1,6 +1,8 @@
 ---
-title: CDC
-parent: Other Endpoints (COVID-19 and Other Diseases)
+title: <i>inactive</i> CDC
+parent: Data Sources and Signals
+grand_parent: Other Endpoints (COVID-19 and Other Diseases)
+nav_order: 2
 ---
 
 # CDC

diff --git a/docs/api/client_libraries.md b/docs/api/client_libraries.md
@@ -1,18 +1,18 @@
 ---
-title: Epidata API Client Libraries
+title: API Clients
 parent: Other Endpoints (COVID-19 and Other Diseases)
 nav_order: 1
 ---
 
-# Epidata API Client Libraries
+# Epidata API Clients
 
 To access Delphi Epidata programmatically, we recommend our client libraries:
 
 - R: [epidatr](https://cmu-delphi.github.io/epidatr/),
 - Python: [delphi-epidata](https://pypi.org/project/delphi-epidata/) (soon to be replaced with [epidatpy](https://github.com/cmu-delphi/epidatpy)),
 - Javascript: [delphi-epidata](https://github.com/cmu-delphi/delphi-epidata/blob/master/src/client/delphi_epidata.js).
 
-For anyone looking for COVIDCast data, please visit our [COVIDCast Libraries](covidcast_clients.md).
+For anyone looking for COVIDCast data, please visit our [COVIDCast API Client Libraries](covidcast_clients.md).
 
 The following samples show how to import the library and fetch Delphi's
 COVID-19 Surveillance Streams from Facebook Survey CLI for county 06001 and days

diff --git a/docs/api/covid_hosp.md b/docs/api/covid_hosp.md
@@ -1,6 +1,8 @@
 ---
-title: COVID-19 Reported Patient Impact and Hospital Capacity by State Timeseries
-parent: Other Endpoints (COVID-19 and Other Diseases)
+title: <i>inactive</i> COVID-19 Reported Patient Impact and Hospital Capacity by State Timeseries
+parent: Data Sources and Signals
+grand_parent: Other Endpoints (COVID-19 and Other Diseases)
+nav_order: 2
 ---
 
 # COVID-19 Hospitalization by State

diff --git a/docs/api/covid_hosp_facility.md b/docs/api/covid_hosp_facility.md
@@ -1,6 +1,8 @@
 ---
-title: COVID-19 Reported Patient Impact and Hospital Capacity by Facility
-parent: Other Endpoints (COVID-19 and Other Diseases)
+title: <i>inactive</i> COVID-19 Reported Patient Impact and Hospital Capacity by Facility
+parent: Data Sources and Signals
+grand_parent: Other Endpoints (COVID-19 and Other Diseases)
+nav_order: 2
 ---
 
 # COVID-19 Hospitalization by Facility

diff --git a/docs/api/covid_hosp_facility_lookup.md b/docs/api/covid_hosp_facility_lookup.md
@@ -1,6 +1,8 @@
 ---
-title: COVID-19 Reported Patient Impact and Hospital Capacity - Facility lookup
-parent: Other Endpoints (COVID-19 and Other Diseases)
+title: <i>inactive</i> COVID-19 Reported Patient Impact and Hospital Capacity - Facility lookup
+parent: Data Sources and Signals
+grand_parent: Other Endpoints (COVID-19 and Other Diseases)
+nav_order: 2
 ---
 
 # COVID-19 Hospitalization: Facility Lookup

diff --git a/docs/api/covidcast-signals/_source-template.md b/docs/api/covidcast-signals/_source-template.md
@@ -1,7 +1,7 @@
 ---
 title: SOURCE NAME
 parent: Data Sources and Signals
-grand_parent: COVIDcast Main Endpoint
+grand_parent: Main Endpoint (COVIDcast)
 ---
 
 # SOURCE NAME

diff --git a/docs/api/covidcast-signals/chng.md b/docs/api/covidcast-signals/chng.md
@@ -1,7 +1,8 @@
 ---
 title: Change Healthcare
 parent: Data Sources and Signals
-grand_parent: COVIDcast Main Endpoint
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 1
 ---
 
 # Change Healthcare

diff --git a/docs/api/covidcast-signals/covid-act-now.md b/docs/api/covidcast-signals/covid-act-now.md
@@ -1,7 +1,8 @@
 ---
-title: COVID Act Now
-parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+title: <i>inactive</i> COVID Act Now
+parent: Data Sources and Signals
+nav_order: 2
+grand_parent: Main Endpoint (COVIDcast)
 ---
 
 # COVID Act Now (CAN)

diff --git a/docs/api/covidcast-signals/doctor-visits.md b/docs/api/covidcast-signals/doctor-visits.md
@@ -1,7 +1,8 @@
 ---
 title: Doctor Visits
 parent: Data Sources and Signals
-grand_parent: COVIDcast Main Endpoint
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 1
 ---
 
 # Doctor Visits

diff --git a/docs/api/covidcast-signals/dsew-cpr.md b/docs/api/covidcast-signals/dsew-cpr.md
@@ -1,7 +1,8 @@
 ---
-title: Data Strategy and Execution Workgroup Community Profile Report
-parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+title: <i>inactive</i> Data Strategy and Execution Workgroup Community Profile Report
+parent: Data Sources and Signals
+nav_order: 2
+grand_parent: Main Endpoint (COVIDcast)
 ---
 
 # Data Strategy and Execution Workgroup Community Profile Report (CPR)

diff --git a/docs/api/covidcast-signals/fb-survey.md b/docs/api/covidcast-signals/fb-survey.md
@@ -1,10 +1,11 @@
 ---
-title: COVID-19 Trends and Impact Survey
-parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+title: <i>inactive</i> COVID-19 Trends and Impact Survey
+parent: Data Sources and Signals
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 2
 ---
 
-# COVID-19 Trends and Impact Survey
+# COVID-19 Trends and Impact Survey 2020-2022 (Facebook Survey)
 {: .no_toc}
 
 * **Source name:** `fb-survey`

diff --git a/docs/api/covidcast-signals/ght.md b/docs/api/covidcast-signals/ght.md
@@ -1,7 +1,8 @@
 ---
 title: Google Health Trends
 parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+nav_order: 2
+grand_parent: Main Endpoint (COVIDcast)
 ---
 
 # Google Health Trends

diff --git a/docs/api/covidcast-signals/google-survey.md b/docs/api/covidcast-signals/google-survey.md
@@ -1,7 +1,8 @@
 ---
-title: Google Symptom Surveys
-parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+title: <i>inactive</i> Google Symptom Surveys
+parent: Data Sources and Signals
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 2
 ---
 
 # Google Symptom Surveys
@@ -25,7 +26,7 @@ is sick (fever, along with cough, or shortness of breath, or difficulty
 breathing) right now?" Using this survey data, we estimate the percentage of
 people in a given location, on a given day, that *know somebody who has a
 COVID-like illness*. This estimates a similar quantity to the `*_cmnty_cli`
-signals from the [Symptom Surveys](fb-survey.md) (`fb-survey`) source, but using
+signals from the [COVID-19 Trends and Impact Survey](fb-survey.md) (`fb-survey`) source, but using
 a different survey population and recruitment method.
 
 The survey sampled from all counties with greater than 100,000 population, along
@@ -263,12 +264,12 @@ probabilities and contribute variance.
 
 ### Smoothing
 
-Additionally, as with the Facebook surveys, we consider estimates formed by
+Additionally, as with the COVID-19 Trends and Impact Survey, we consider estimates formed by
 pooling data over time.  That is, daily, for each location, we first pool all
 data available in that location over the last 5 days, and compute the estimates
 given above using all five days of data.
 
-In contrast to the Facebook surveys, this pooling does not significantly change
+In contrast to the COVID-19 Trends and Impact Survey, this pooling does not significantly change
 the availability of estimates, because of our stratified sampling procedure
 (essentially always) delivers sufficient data at the county level---at least 100
 survey responses---to warrant their own estimates. However, the pooling

diff --git a/docs/api/covidcast-signals/google-symptoms.md b/docs/api/covidcast-signals/google-symptoms.md
@@ -1,7 +1,8 @@
 ---
-title: Google Search Trends symptoms dataset
+title: <i>inactive</i> Google Search Trends Symptoms
 parent: Data Sources and Signals
-grand_parent: COVIDcast Main Endpoint
+nav_order: 2
+grand_parent: Main Endpoint (COVIDcast)
 ---
 
 # Google Symptoms

diff --git a/docs/api/covidcast-signals/hhs.md b/docs/api/covidcast-signals/hhs.md
@@ -1,7 +1,8 @@
 ---
-title: Department of Health & Human Services
-parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+title: <i>inactive</i> Department of Health & Human Services
+parent: Data Sources and Signals
+nav_order: 2
+grand_parent: Main Endpoint (COVIDcast)
 ---
 
 # Department of Health & Human Services

diff --git a/docs/api/covidcast-signals/hospital-admissions.md b/docs/api/covidcast-signals/hospital-admissions.md
@@ -1,7 +1,8 @@
 ---
 title: Hospital Admissions
 parent: Data Sources and Signals
-grand_parent: COVIDcast Main Endpoint
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 1
 ---
 
 # Hospital Admissions

diff --git a/docs/api/covidcast-signals/indicator-combination.md b/docs/api/covidcast-signals/indicator-combination.md
@@ -1,7 +1,8 @@
 ---
-title: Indicator Combination
-parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+title: <i>inactive</i> Indicator Combination
+parent: Data Sources and Signals
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 2
 ---
 
 # Indicator Combination

diff --git a/docs/api/covidcast-signals/jhu-csse.md b/docs/api/covidcast-signals/jhu-csse.md
@@ -1,7 +1,8 @@
 ---
-title: JHU Cases and Deaths
-parent: Inactive Signals
-grand_parent: COVIDcast Main Endpoint
+title: <i>inactive</i> JHU Cases and Deaths
+parent: Data Sources and Signals
+nav_order: 2
+grand_parent: Main Endpoint (COVIDcast)
 ---
 
 # JHU Cases and Deaths

diff --git a/docs/api/covidcast-signals/nchs-mortality.md b/docs/api/covidcast-signals/nchs-mortality.md
@@ -1,7 +1,8 @@
 ---
 title: NCHS Mortality Data
 parent: Data Sources and Signals
-grand_parent: COVIDcast Main Endpoint
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 1
 ---
 
 # NCHS Mortality Data

diff --git a/docs/api/covidcast-signals/nssp.md b/docs/api/covidcast-signals/nssp.md
@@ -1,7 +1,8 @@
 ---
 title: NSSP ED Visits
 parent: Data Sources and Signals
-grand_parent: COVIDcast Main Endpoint
+grand_parent: Main Endpoint (COVIDcast)
+nav_order: 1
 ---
 # National Syndromic Surveillance Program Emergency Department Visits
 {: .no_toc}

diff --git a/docs/api/covidcast-signals/quidel-flu.md b/docs/api/covidcast-signals/quidel-flu.md