Include some of the sister extension metadata

[alessandratrapani]

This PR is to refine the previous implementation #5:

• change names of the following datatype:
  • HolographicSeries --> PatternedOptogeneticSeries
  • HolographicStimulusSite --> PatternedOptogeneticStimulusSite
  • HolographicStimulusPattern --> OptogeneticStimulusPattern
• Add SpatialLightModulator and LightSource as in suggested in Merge and collaborate with sister extension #6
• Add common properties of the stimulus pattern to OptogeneticStimulusPattern :
  • duration
  • number_of_stimulus_presentation
  • inter_stimulus_interval
• Refine names for properties of SpiralScanning and TemporalFocusing
• Add pattern table and index
• example files that use this structure from both the mouse V1 and Pinto lab

[CodyCBakerPhD]

@alessandratrapani So to confirm - this PR is considered a replacement for #5 and #2?

Overall everything looks good IMO but to absolutely clarify it would be great to get example files that use this structure from both the mouse V1 and Pinto lab

And then schedule a meeting with the Histed group to get their take on the aspects of ours that generalize, and if they'd like to help prepare the NEP document

[alessandratrapani]

So to confirm - this PR is considered a replacement for #5 and #2?

Yes, I didn't want to touch #5 since it's working as it is and if we want to go back to the previous implementation, I have a working branch for that.
Different for #2 that could be closed and replaced by #5, I think.

Overall everything looks good IMO but to absolutely clarify it would be great to get example files that use this structure from both the mouse V1 and Pinto lab

adding this to the TODO list.

[weiglszonja]

@alessandratrapani can you address these if you agree:

• fix typo stimulation_wavelenght to stimulation_wavelength
• choose different name for "filter" shadows built-in filter object

[CodyCBakerPhD]

State of this PR: this branch will serve only as an example of how our structure might or could be eventually extended further with minimal effort to account for more dynamic pattern presentations over time

However, #7 is the more concise and efficient description of association of patterned stimulation over time per pattern type

[CodyCBakerPhD]

@alessandratrapani Can you fix these merge conflicts when you get a moment?