Cleanup of regression script

docs/regressions-backgroundlinking18.md

@@ -10,8 +10,8 @@ Typical indexing command:
 
 ```
 nohup sh target/appassembler/bin/IndexCollection -collection WashingtonPostCollection -input /path/to/backgroundlinking18 \
- -index lucene-index.backgroundlinking18.pos+docvectors+rawdocs -generator WashingtonPostGenerator -threads 1 \
- -storePositions -storeDocvectors -storeRaw >& log.backgroundlinking18.pos+docvectors+rawdocs &
+ -index indexes/lucene-index.core18.pos+docvectors+raw -generator WashingtonPostGenerator -threads 1 \
+ -storePositions -storeDocvectors -storeRaw >& logs/log.backgroundlinking18.pos+docvectors+rawdocs &
 ```
 
 The directory `/path/to/core18/` should be the root directory of the [TREC Washington Post Corpus](https://trec.nist.gov/data/wapost/), i.e., `ls /path/to/core18/`
@@ -29,15 +29,15 @@ Topics and qrels are stored in [`src/main/resources/topics-and-qrels/`](../src/m
 After indexing has completed, you should be able to perform retrieval as follows:
 
 ```
-nohup target/appassembler/bin/SearchCollection -index lucene-index.backgroundlinking18.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core18.pos+docvectors+raw \
  -topicreader BackgroundLinking -topics src/main/resources/topics-and-qrels/topics.backgroundlinking18.txt \
  -backgroundlinking -backgroundlinking.k 100 -bm25 -hits 100 -output run.backgroundlinking18.bm25.topics.backgroundlinking18.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.backgroundlinking18.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core18.pos+docvectors+raw \
  -topicreader BackgroundLinking -topics src/main/resources/topics-and-qrels/topics.backgroundlinking18.txt \
  -backgroundlinking -backgroundlinking.k 100 -bm25 -rm3 -hits 100 -output run.backgroundlinking18.bm25+rm3.topics.backgroundlinking18.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.backgroundlinking18.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core18.pos+docvectors+raw \
  -topicreader BackgroundLinking -topics src/main/resources/topics-and-qrels/topics.backgroundlinking18.txt \
  -backgroundlinking -backgroundlinking.datefilter -backgroundlinking.k 100 -bm25 -rm3 -hits 100 -output run.backgroundlinking18.bm25+rm3+df.topics.backgroundlinking18.txt &
 ```

docs/regressions-backgroundlinking19.md

@@ -10,8 +10,8 @@ Typical indexing command:
 
 ```
 nohup sh target/appassembler/bin/IndexCollection -collection WashingtonPostCollection -input /path/to/backgroundlinking19 \
- -index lucene-index.backgroundlinking19.pos+docvectors+rawdocs -generator WashingtonPostGenerator -threads 1 \
- -storePositions -storeDocvectors -storeRaw >& log.backgroundlinking19.pos+docvectors+rawdocs &
+ -index indexes/lucene-index.core18.pos+docvectors+raw -generator WashingtonPostGenerator -threads 1 \
+ -storePositions -storeDocvectors -storeRaw >& logs/log.backgroundlinking19.pos+docvectors+rawdocs &
 ```
 
 The directory `/path/to/core18/` should be the root directory of the [TREC Washington Post Corpus](https://trec.nist.gov/data/wapost/), i.e., `ls /path/to/core18/`
@@ -29,15 +29,15 @@ Topics and qrels are stored in [`src/main/resources/topics-and-qrels/`](../src/m
 After indexing has completed, you should be able to perform retrieval as follows:
 
 ```
-nohup target/appassembler/bin/SearchCollection -index lucene-index.backgroundlinking19.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core18.pos+docvectors+raw \
  -topicreader BackgroundLinking -topics src/main/resources/topics-and-qrels/topics.backgroundlinking19.txt \
  -backgroundlinking -backgroundlinking.k 100 -bm25 -hits 100 -output run.backgroundlinking19.bm25.topics.backgroundlinking19.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.backgroundlinking19.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core18.pos+docvectors+raw \
  -topicreader BackgroundLinking -topics src/main/resources/topics-and-qrels/topics.backgroundlinking19.txt \
  -backgroundlinking -backgroundlinking.k 100 -bm25 -rm3 -hits 100 -output run.backgroundlinking19.bm25+rm3.topics.backgroundlinking19.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.backgroundlinking19.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core18.pos+docvectors+raw \
  -topicreader BackgroundLinking -topics src/main/resources/topics-and-qrels/topics.backgroundlinking19.txt \
  -backgroundlinking -backgroundlinking.datefilter -backgroundlinking.k 100 -bm25 -rm3 -hits 100 -output run.backgroundlinking19.bm25+rm3+df.topics.backgroundlinking19.txt &
 ```

docs/regressions-car17v1.5.md

@@ -10,8 +10,8 @@ Typical indexing command:
 
 ```
 nohup sh target/appassembler/bin/IndexCollection -collection CarCollection -input /path/to/car17v1.5 \
- -index lucene-index.car17v1.5.pos+docvectors+rawdocs -generator DefaultLuceneDocumentGenerator -threads 1 \
- -storePositions -storeDocvectors -storeRaw >& log.car17v1.5.pos+docvectors+rawdocs &
+ -index indexes/lucene-index.car17v1.5.pos+docvectors+raw -generator DefaultLuceneDocumentGenerator -threads 1 \
+ -storePositions -storeDocvectors -storeRaw >& logs/log.car17v1.5.pos+docvectors+rawdocs &
 ```
 
 The directory `/path/to/car17v1.5` should be the root directory of Complex Answer Retrieval (CAR) paragraph corpus (v1.5), which can be downloaded [here](http://trec-car.cs.unh.edu/datareleases/).
@@ -30,27 +30,27 @@ Specifically, this is the section-level passage retrieval task with automatic gr
 After indexing has completed, you should be able to perform retrieval as follows:
 
 ```
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v1.5.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v1.5.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v1.5.benchmarkY1test.txt \
  -bm25 -output run.car17v1.5.bm25.topics.car17v1.5.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v1.5.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v1.5.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v1.5.benchmarkY1test.txt \
  -bm25 -rm3 -output run.car17v1.5.bm25+rm3.topics.car17v1.5.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v1.5.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v1.5.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v1.5.benchmarkY1test.txt \
  -bm25 -axiom -axiom.deterministic -rerankCutoff 20 -output run.car17v1.5.bm25+ax.topics.car17v1.5.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v1.5.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v1.5.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v1.5.benchmarkY1test.txt \
  -qld -output run.car17v1.5.ql.topics.car17v1.5.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v1.5.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v1.5.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v1.5.benchmarkY1test.txt \
  -qld -rm3 -output run.car17v1.5.ql+rm3.topics.car17v1.5.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v1.5.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v1.5.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v1.5.benchmarkY1test.txt \
  -qld -axiom -axiom.deterministic -rerankCutoff 20 -output run.car17v1.5.ql+ax.topics.car17v1.5.benchmarkY1test.txt &
 ```

docs/regressions-car17v2.0-doc2query.md

@@ -16,8 +16,8 @@ Typical indexing command:
 
 ```
 nohup sh target/appassembler/bin/IndexCollection -collection JsonCollection -input /path/to/car17v2.0-doc2query \
- -index lucene-index.car17v2.0-doc2query.pos+docvectors+rawdocs -generator DefaultLuceneDocumentGenerator -threads 30 \
- -storePositions -storeDocvectors -storeRaw >& log.car17v2.0-doc2query.pos+docvectors+rawdocs &
+ -index indexes/lucene-index.car17v2.0-doc2query.pos+docvectors+raw -generator DefaultLuceneDocumentGenerator -threads 30 \
+ -storePositions -storeDocvectors -storeRaw >& logs/log.car17v2.0-doc2query.pos+docvectors+rawdocs &
 ```
 
 The directory `/path/to/car17v2.0-doc2query` should be the root directory of Complex Answer Retrieval (CAR) paragraph corpus (v2.0) that has been augmented with the doc2query expansions, i.e., `collection_jsonl_expanded_topk10/` as described in [this page](experiments-doc2query.md).
@@ -36,27 +36,27 @@ Specifically, this is the section-level passage retrieval task with automatic gr
 After indexing has completed, you should be able to perform retrieval as follows:
 
 ```
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0-doc2query.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0-doc2query.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -bm25 -output run.car17v2.0-doc2query.bm25.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0-doc2query.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0-doc2query.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -bm25 -rm3 -output run.car17v2.0-doc2query.bm25+rm3.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0-doc2query.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0-doc2query.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -bm25 -axiom -axiom.deterministic -rerankCutoff 20 -output run.car17v2.0-doc2query.bm25+ax.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0-doc2query.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0-doc2query.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -qld -output run.car17v2.0-doc2query.ql.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0-doc2query.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0-doc2query.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -qld -rm3 -output run.car17v2.0-doc2query.ql+rm3.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0-doc2query.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0-doc2query.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -qld -axiom -axiom.deterministic -rerankCutoff 20 -output run.car17v2.0-doc2query.ql+ax.topics.car17v2.0.benchmarkY1test.txt &
 ```

docs/regressions-car17v2.0.md

@@ -10,8 +10,8 @@ Typical indexing command:
 
 ```
 nohup sh target/appassembler/bin/IndexCollection -collection CarCollection -input /path/to/car17v2.0 \
- -index lucene-index.car17v2.0.pos+docvectors+rawdocs -generator DefaultLuceneDocumentGenerator -threads 1 \
- -storePositions -storeDocvectors -storeRaw >& log.car17v2.0.pos+docvectors+rawdocs &
+ -index indexes/lucene-index.car17v2.0.pos+docvectors+raw -generator DefaultLuceneDocumentGenerator -threads 1 \
+ -storePositions -storeDocvectors -storeRaw >& logs/log.car17v2.0.pos+docvectors+rawdocs &
 ```
 
 The directory `/path/to/car17v2.0` should be the root directory of Complex Answer Retrieval (CAR) paragraph corpus (v2.0), which can be downloaded [here](http://trec-car.cs.unh.edu/datareleases/).
@@ -30,27 +30,27 @@ Specifically, this is the section-level passage retrieval task with automatic gr
 After indexing has completed, you should be able to perform retrieval as follows:
 
 ```
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -bm25 -output run.car17v2.0.bm25.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -bm25 -rm3 -output run.car17v2.0.bm25+rm3.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -bm25 -axiom -axiom.deterministic -rerankCutoff 20 -output run.car17v2.0.bm25+ax.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -qld -output run.car17v2.0.ql.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -qld -rm3 -output run.car17v2.0.ql+rm3.topics.car17v2.0.benchmarkY1test.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.car17v2.0.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.car17v2.0.pos+docvectors+raw \
  -topicreader Car -topics src/main/resources/topics-and-qrels/topics.car17v2.0.benchmarkY1test.txt \
  -qld -axiom -axiom.deterministic -rerankCutoff 20 -output run.car17v2.0.ql+ax.topics.car17v2.0.benchmarkY1test.txt &
 ```

docs/regressions-clef06-fr.md

@@ -12,8 +12,8 @@ Typical indexing command:
 
 ```
 nohup sh target/appassembler/bin/IndexCollection -collection JsonCollection -input /path/to/clef06-fr \
- -index lucene-index.clef06-fr.pos+docvectors+rawdocs -generator DefaultLuceneDocumentGenerator -threads 16 \
- -storePositions -storeDocvectors -storeRaw -language fr >& log.clef06-fr.pos+docvectors+rawdocs &
+ -index indexes/lucene-index.clef06-fr.pos+docvectors+raw -generator DefaultLuceneDocumentGenerator -threads 16 \
+ -storePositions -storeDocvectors -storeRaw -language fr >& logs/log.clef06-fr.pos+docvectors+rawdocs &
 ```
 
 The collection comprises news articles from ATS (SDA) and Le Monde totaling 177,452 documents.
@@ -32,7 +32,7 @@ Topics and qrels are stored in [`src/main/resources/topics-and-qrels/`](../src/m
 After indexing has completed, you should be able to perform retrieval as follows:
 
 ```
-nohup target/appassembler/bin/SearchCollection -index lucene-index.clef06-fr.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.clef06-fr.pos+docvectors+raw \
  -topicreader TsvString -topics src/main/resources/topics-and-qrels/topics.clef06fr.mono.fr.txt \
  -language fr -bm25 -output run.clef06-fr.bm25.topics.clef06fr.mono.fr.txt &
 ```

docs/regressions-core17.md

@@ -10,8 +10,8 @@ Typical indexing command:
 
 ```
 nohup sh target/appassembler/bin/IndexCollection -collection NewYorkTimesCollection -input /path/to/core17 \
- -index lucene-index.core17.pos+docvectors+rawdocs -generator DefaultLuceneDocumentGenerator -threads 16 \
- -storePositions -storeDocvectors -storeRaw >& log.core17.pos+docvectors+rawdocs &
+ -index indexes/lucene-index.core17.pos+docvectors+raw -generator DefaultLuceneDocumentGenerator -threads 16 \
+ -storePositions -storeDocvectors -storeRaw >& logs/log.core17.pos+docvectors+rawdocs &
 ```
 
 The directory `/path/to/nyt_corpus/` should be the root directory of the [New York Times Annotated Corpus](https://catalog.ldc.upenn.edu/LDC2008T19), i.e., `ls /path/to/nyt_corpus/`
@@ -29,27 +29,27 @@ Topics and qrels are stored in [`src/main/resources/topics-and-qrels/`](../src/m
 After indexing has completed, you should be able to perform retrieval as follows:
 
 ```
-nohup target/appassembler/bin/SearchCollection -index lucene-index.core17.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core17.pos+docvectors+raw \
  -topicreader Trec -topics src/main/resources/topics-and-qrels/topics.core17.txt \
  -bm25 -output run.core17.bm25.topics.core17.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.core17.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core17.pos+docvectors+raw \
  -topicreader Trec -topics src/main/resources/topics-and-qrels/topics.core17.txt \
  -bm25 -rm3 -output run.core17.bm25+rm3.topics.core17.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.core17.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core17.pos+docvectors+raw \
  -topicreader Trec -topics src/main/resources/topics-and-qrels/topics.core17.txt \
  -bm25 -axiom -axiom.deterministic -rerankCutoff 20 -output run.core17.bm25+ax.topics.core17.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.core17.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core17.pos+docvectors+raw \
  -topicreader Trec -topics src/main/resources/topics-and-qrels/topics.core17.txt \
  -qld -output run.core17.ql.topics.core17.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.core17.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core17.pos+docvectors+raw \
  -topicreader Trec -topics src/main/resources/topics-and-qrels/topics.core17.txt \
  -qld -rm3 -output run.core17.ql+rm3.topics.core17.txt &
 
-nohup target/appassembler/bin/SearchCollection -index lucene-index.core17.pos+docvectors+rawdocs \
+nohup target/appassembler/bin/SearchCollection -index indexes/lucene-index.core17.pos+docvectors+raw \
  -topicreader Trec -topics src/main/resources/topics-and-qrels/topics.core17.txt \
  -qld -axiom -axiom.deterministic -rerankCutoff 20 -output run.core17.ql+ax.topics.core17.txt &
 ```