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Merge pull request #40 from jdblischak/7.8-re-run
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Note that the re-run triggers changed in Snakemake 7.8.0
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tbooth authored Sep 26, 2023
2 parents 7744946 + 439e591 commit 004f647
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9 changes: 6 additions & 3 deletions _episodes/08-configuring.md
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Expand Up @@ -81,13 +81,16 @@ rule more readable.
> >
> > * You can choose a different parameter name, but it must be a valid identifier - no spaces or
> > hyphens.
> > * Changing the parameters doesn't automatically trigger Snakemake to re-run the rule (remember
> > it only looks at file modification times) so you need to use `-f` (or `-R` or `-F`) to
> > force the job to be re-run.
> > * Changing the parameters doesn't automatically trigger Snakemake to re-run the rule so you need to use
> > `-f` (or `-R` or `-F`) to force the job to be re-run (note: as mentioned in
> > [episode 4]({{ page.root }}{% link _episodes/04-the_dag.md %}#another-note-on--r)
> > this behaviour is changed in recent Snakemake versions).
> >
> {: .solution}
{: .challenge}
[snakemake-7.8.0]: https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md#780-2022-05-24
## Making Snakefiles configurable
In general, it's good practise to break out parameters that you intend to change into a separate
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