Code

Nwb insert config#1

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calderast merged 61 commits intocalderast:stephcalderast/spyglass:stephfrom samuelbray32:nwb_insert_configsamuelbray32/spyglass_chris:nwb_insert_configCopy head branch name to clipboardJul 2, 2024

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Commits on Mar 18, 2024

• Fix failing chains pytests (LorenFrankLab#867)

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Commits on Mar 20, 2024

• Hhmi notebook check (LorenFrankLab#876)

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• Remove curation notebook

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Commits on Mar 21, 2024

• Refine query of upstream tables on FigURL populate (LorenFrankLab#871)

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• Fix dlc video and kachery cloud config (LorenFrankLab#882)

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• Edits for docs (LorenFrankLab#883)

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Commits on Mar 22, 2024

• Hhmi notebook check (LorenFrankLab#888)

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Commits on Mar 26, 2024

• Update call to get_template_extremum (LorenFrankLab#893)

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Commits on Mar 27, 2024

• Add spyglass version to created analysis nwb files (LorenFrankLab#897)

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Commits on Mar 28, 2024

• Change existing source script to spyglass version (LorenFrankLab#900)

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Commits on Mar 29, 2024

• Add pynapple support (LorenFrankLab#898)

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• Hot fixes for clusterless get_ahead_behind_distance and get_spike_times (LorenFrankLab#904)

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Commits on Apr 3, 2024

• fix bugs in fetch_nwb (LorenFrankLab#913)

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Commits on Apr 11, 2024

• Check for entry in merge part table prior to insert (LorenFrankLab#922)

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• Kachery fixes (LorenFrankLab#918)

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• remove old tables from init (LorenFrankLab#925)

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Commits on Apr 12, 2024

• Fix improper uses of strip (LorenFrankLab#929)

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• Update CHANGELOG.md

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Commits on Apr 19, 2024

• Misc Issues (LorenFrankLab#903)

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• Export logger (LorenFrankLab#875)

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• Spikesorting quality of life helpers (LorenFrankLab#910)

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Commits on Apr 21, 2024

• Add logging of AnalysisNwbfile creation time and file size (LorenFrankLab#937)

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Commits on Apr 22, 2024

• Log when file accessed (LorenFrankLab#941)

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• Fix bug on empty delete in merge table (LorenFrankLab#940)

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• Remove master restriction

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Commits on Apr 25, 2024

• Add system requirements and typical installation time (LorenFrankLab#945)

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Commits on May 6, 2024

• Group part delete propagation (LorenFrankLab#899)

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Commits on May 7, 2024

• Fix bug report template html (LorenFrankLab#955)

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Commits on May 8, 2024

• fix curation fetch bug in make function (LorenFrankLab#960)

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Commits on May 10, 2024

• Fix tests/doc build (LorenFrankLab#967)

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• Pin mkdocstrings-python<=1.9.0

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• Fix relative pathing for mkdocstrings>=1.9.1 (LorenFrankLab#968)

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• Long distance restrictions (LorenFrankLab#949)

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• Transaction on populate_all_common (LorenFrankLab#957)

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• Permit multiple restrict_by (LorenFrankLab#969)

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Commits on May 13, 2024

• Allow dlc pipeline to run without prior position tracking (LorenFrankLab#970)

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• Revert "Allow dlc pipeline to run without prior position tracking (LorenFrankLab#970)" (LorenFrankLab#972)

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• Fix test fails related to LorenFrankLab#957 (LorenFrankLab#971)

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• Allow dlc pipeline to run without prior position tracking (LorenFrankLab#973)

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Commits on May 15, 2024

• Cleanup of dlc video (LorenFrankLab#975)

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Commits on May 20, 2024

• Replace old join call with cascade (LorenFrankLab#982)

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Commits on May 21, 2024

• Check existence of optional fields during Electrode table population (LorenFrankLab#985)

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Commits on May 29, 2024

• Add pytests to position (LorenFrankLab#966)

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• Don't insert lab member when creating lab team (LorenFrankLab#983)

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Commits on Jun 3, 2024

• Add ability to set smoothing sigma in get_firing_rate (LorenFrankLab#994)

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Commits on Jun 4, 2024

• Add docstrings to SortedSpikesGroup and Decoding methods (LorenFrankLab#996)

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• Add Common Errors doc (LorenFrankLab#997)

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Commits on Jun 5, 2024

• Mua notebook (LorenFrankLab#998)

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Commits on Jun 6, 2024

• Dandi export and read (LorenFrankLab#956)

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• Minor fixes (LorenFrankLab#999)

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Commits on Jun 10, 2024

• Fix bug in change in analysis_file object_id (LorenFrankLab#1004)

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Commits on Jun 11, 2024

• Remove classes for usused tables (LorenFrankLab#1003)

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Commits on Jun 14, 2024

• Non-daemon parallel populate (LorenFrankLab#1001)

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Commits on Jun 18, 2024

• Give UUID to artifact interval (LorenFrankLab#993)

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Commits on Jun 25, 2024

• Fix artifact list_triggers (LorenFrankLab#1009)

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• remove problem key in DLCPosV1 fetch_nwb attrs (LorenFrankLab#1011)

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Commits on Jun 26, 2024

• Tidy position (LorenFrankLab#870)

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• Prevent delete orphans (LorenFrankLab#1002)

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Commits on Jun 27, 2024

• remove kachery_client dependency (LorenFrankLab#1014)

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Commits on Jul 1, 2024

• merge master

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• add default config to arguments

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