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Extend valid mRNA expression profile ids #7033

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Jan 21, 2020
Merged

Extend valid mRNA expression profile ids #7033

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10 changes: 10 additions & 0 deletions core/src/main/scripts/importer/allowed_data_types.txt
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Expand Up @@ -35,6 +35,16 @@ MRNA_EXPRESSION CONTINUOUS mrna_seq_fpkm_capture
MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_capture_Zscores
MRNA_EXPRESSION CONTINUOUS mrna_seq_fpkm_polya
MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_polya_Zscores
MRNA_EXPRESSION Z-SCORE mrna_U133_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE mrna_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE rna_seq_mrna_median_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE mrna_median_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE rna_seq_v2_mrna_median_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE mrna_seq_cpm_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE mrna_seq_tpm_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE rna_seq_mrna_capture_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_capture_all_sample_Zscores
MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_polya_all_sample_Zscores
METHYLATION CONTINUOUS methylation_hm27
METHYLATION CONTINUOUS methylation_hm450
FUSION FUSION fusion
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2 changes: 1 addition & 1 deletion core/src/test/scripts/test_data/study_wr_clin/result_report.html
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Expand Up @@ -182,7 +182,7 @@ <h4 class="panel-title">meta_expression_median.txt</h4>
<td><span class="glyphicon glyphicon-remove" aria-hidden="true"></span><span class="sr-only">Error</span></td>
<td>&ndash;</td>
<td>&ndash;</td>
<td>Invalid stable id for genetic_alteration_type &#39;MRNA_EXPRESSION&#39;, data_type &#39;Z-SCORE&#39;; expected one of [mrna_U133_Zscores, rna_seq_mrna_median_Zscores, mrna_median_Zscores, rna_seq_v2_mrna_median_Zscores, mirna_median_Zscores, mrna_merged_median_Zscores, mrna_zbynorm, mrna_seq_tpm_Zscores, mrna_seq_cpm_Zscores, rna_seq_mrna_capture_Zscores, mrna_seq_fpkm_capture_Zscores, mrna_seq_fpkm_polya_Zscores]</td>
<td>Invalid stable id for genetic_alteration_type &#39;MRNA_EXPRESSION&#39;, data_type &#39;Z-SCORE&#39;; expected one of [mrna_U133_Zscores, rna_seq_mrna_median_Zscores, mrna_median_Zscores, rna_seq_v2_mrna_median_Zscores, mirna_median_Zscores, mrna_merged_median_Zscores, mrna_zbynorm, mrna_seq_tpm_Zscores, mrna_seq_cpm_Zscores, rna_seq_mrna_capture_Zscores, mrna_seq_fpkm_capture_Zscores, mrna_seq_fpkm_polya_Zscores, mrna_U133_all_sample_Zscores, mrna_all_sample_Zscores, rna_seq_mrna_median_all_sample_Zscores, mrna_median_all_sample_Zscores, rna_seq_v2_mrna_median_all_sample_Zscores, mrna_seq_cpm_all_sample_Zscores, mrna_seq_tpm_all_sample_Zscores, rna_seq_mrna_capture_all_sample_Zscores, mrna_seq_fpkm_capture_all_sample_Zscores, mrna_seq_fpkm_polya_all_sample_Zscores]</td>
<td>mrna</td>
</tr>
</tbody>
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