RFC83: Add admin call to make virtual study available for all users on their landing pages#10829

Merged

forus merged 28 commits intomasterfrom rfc83

Jul 10, 2024

+603-26

Commits on Jul 10, 2024

Implement endpoints for public virtual studies
forus
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Add possibility to specify cancer type id and pmi for virt. study during publishing
forus
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Filter out forbidden study ids from virtual studies
forus
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Do not allow set * user for user virtual study
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Add integration tests for (un)publishing virtual study
forus
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Assert fields fo published virtual studies
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Use recommended ways to inject dependencies in spring
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Add issue link to session service FIXMEs
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Fix sonar reported NPE bugs
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Remove unnecessary checks for null
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Remove obsolete TODO comment
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Throw AccessForbiddenException and use GlobalExceptionHadler instead
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Throw IllegalStateException is downstream server return unsuccessful result
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Remove raw use of ResponseEntity
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Throw bad request exception instead of returning ResponseEntity
forus
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Do not filter out VS when user does not hava access to underlying study samples
forus
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Fix integration tests

haynescd
authored and
forus
committed
Extract http calls to the session service to the handler
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Remove todo comment
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Fix sonarcloud issues
forus
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Deduplicate ensuring publisher api key is correct
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Remove usage of generic wildcard type
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Extract logic to update VS metadata fields into a method
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Document publishing virtual study feature
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Update docs/Create-And-Publish-Virtual-Study.md

forus
and
pieterlukasse
committed
Publish virtual study by modifying it instead of making copy
forus
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Improve name and docs of method to retrieve VS for user
forus
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Assign VM after un-publshing to the owner
forus
committed

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RFC83: Add admin call to make virtual study available for all users on their landing pages#10829

Commits on Jul 10, 2024

Implement endpoints for public virtual studies

Add possibility to specify cancer type id and pmi for virt. study during publishing

Filter out forbidden study ids from virtual studies

Do not allow set * user for user virtual study

Add integration tests for (un)publishing virtual study

Assert fields fo published virtual studies

Use recommended ways to inject dependencies in spring

Add issue link to session service FIXMEs

Fix sonar reported NPE bugs

Remove unnecessary checks for null

Remove obsolete TODO comment

Throw AccessForbiddenException and use GlobalExceptionHadler instead

Throw IllegalStateException is downstream server return unsuccessful result

Remove raw use of ResponseEntity

Throw bad request exception instead of returning ResponseEntity

Do not filter out VS when user does not hava access to underlying study samples

Fix integration tests

Extract http calls to the session service to the handler

Remove todo comment

Fix sonarcloud issues

Deduplicate ensuring publisher api key is correct

Remove usage of generic wildcard type

Extract logic to update VS metadata fields into a method

Document publishing virtual study feature

Update docs/Create-And-Publish-Virtual-Study.md

Publish virtual study by modifying it instead of making copy

Improve name and docs of method to retrieve VS for user

Assign VM after un-publshing to the owner