fix

broadinstitute · Feb 4, 2025 · 2681b75 · 2681b75
1 parent 09adf51
commit 2681b75
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pipelines/skylab/atac/atac.wdl b/pipelines/skylab/atac/atac.wdl
@@ -746,7 +746,7 @@ task PeakCalling {
         
     # Filter doublets based on scrublet scores 
     print("Filter doublets based on scrublet scores")
-    snap.pp.filter_doublets(atac_data_mod, probability_threshold=0.5)
+    snap.pp.filter_doublets(atac_data_mod, probability_threshold=0.01)
     print(atac_data_mod)
         
     # Perform graph-based clustering to identify cell clusters.