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53 Open 219 Closed
53 Open 219 Closed
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Issues list

How to deal with classification bias while using single database and its own split version ?
#289 opened Oct 18, 2024 by airmicrobiome
merging kraken2 and kaiju
#288 opened Sep 29, 2024 by DeaconOfBiology
Getting Repeated Species in cell free DNA profiles
#287 opened Sep 2, 2024 by arpit20328
2
No fmi file after kaiju-makedb
#286 opened Aug 28, 2024 by Tpowell7
Alpha diversity
#285 opened Aug 5, 2024 by RarltyOne
kaiju2table taxonomic ranks for viruses
#283 opened May 28, 2024 by jbergt
Not able to download any kaiju_database from https://bioinformatics-centre.github.io/kaiju/downloads.html
#282 opened May 10, 2024 by arpit20328
kaiju-mergeOutputs for merging all kaiju outputs from different databases
#279 opened Feb 20, 2024 by EorgeKit
2
Fungal reads - Which is the best database?
#278 opened Feb 5, 2024 by andressamv
1
Segmentation fault (core dumped)
#277 opened Jan 6, 2024 by DoreenAA2023
3
makedb progenomes fails
#273 opened Nov 23, 2023 by Mewgia
9
more than 73% is unclassified.
#271 opened Oct 17, 2023 by jojyjohn28
2
Read classification using database of single pangenome
#267 opened Jul 23, 2023 by snayfach
Issue with extracting taxdump
#266 opened Jul 4, 2023 by Mayurk619
1
Unable to Find Taxon_ID of the Top-hit Species in Kaiju Output File Despite Being the Highest-Reads Species in Kaiju2table Output
#265 opened Jun 29, 2023 by SenyuanGu
4
converting kaiju output to biom format
#264 opened Jun 16, 2023 by najoshi
Error cannot open file
#263 opened Jun 5, 2023 by akhwela
1
webserver is down
#262 opened May 19, 2023 by rec3141
eukdetect gets stuck on taxonomize
#260 opened Apr 3, 2023 by umerijaz
Is there a way to reduce memory requirement?
#258 opened Mar 20, 2023 by aelbehery
4
creating custom db causes classification issues
#257 opened Feb 23, 2023 by najoshi
3
unable to custom DB
#255 opened Feb 8, 2023 by juejun14
4
Different result from blast hit
#253 opened Feb 6, 2023 by MonicaSteffi
4
kaiju-makedb -s nr_euk fails
#252 opened Jan 23, 2023 by ko519
1
Question on kaiju classification from PacBio data
#246 opened Nov 9, 2022 by DaRinker
3
ProTip! Exclude everything labeled bug with -label:bug.