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Added support for restarting jobs (#129)
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15 changes: 15 additions & 0 deletions
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sequence_processing_pipeline/tests/data/sample-convertjob.sh
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#!/bin/bash | ||
#SBATCH --job-name 3f6b1fe3-1f5d-4fec-af47-31a2e35fef91_ConvertJob | ||
#SBATCH -p qiita | ||
#SBATCH -N 1 | ||
#SBATCH -n 16 | ||
#SBATCH --time 180 | ||
#SBATCH --mail-type=ALL | ||
#SBATCH --mail-user [email protected] | ||
#SBATCH --mem-per-cpu 12gb | ||
set -x | ||
date | ||
hostname | ||
cd /sequencing/igm_runs/210820_A00953_0380_BHJ53TDSX2 | ||
module load bclconvert_3.7.5 | ||
bcl-convert --sample-sheet "/qmounts/qiita_data/working_dir/3f6b1fe3-1f5d-4fec-af47-31a2e35fef91/2024-02-08_U19_Wisconsin_15445_reruns_NovaSeq_nonNA.csv" --output-directory /qmounts/qiita_data/working_dir/3f6b1fe3-1f5d-4fec-af47-31a2e35fef91/ConvertJob --bcl-input-directory . --bcl-num-decompression-threads 16 --bcl-num-conversion-threads 16 --bcl-num-compression-threads 16 --bcl-num-parallel-tiles 16 --bcl-sampleproject-subdirectories true --force |
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