[RFC] Add a Galaxy tool for TabPFN package (by Prof. Hutter's group) #1533
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The PR adds a Galaxy tool that uses the TabPFN package (DOI: 10.48550/arXiv.2207.01848) to create a general-purpose classifier.
Many more subsequent analyses can be added as required such as creating workflows with this tool.
A few challenges:
One challenge is the export this classifier to standard ONNX format. The standard export of Pytorch models to ONNX does not work with the trained TabPFN model. We may require it, otherwise, we may have to export the trained model as a zipped file.
Additionally, to move the discussion around integrating the
tabpfn_client
package - it requires a separate login before use, so integrating it to Galaxy would be complicated I think unless there is a way to bypass the login process.Thank you!
ping @bgruening