mutations that cause HBV to develop resistance against nucleoside ana… #53
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test of HBVouroboros with pytest | |
| on: [push] | |
| jobs: | |
| pytest_pipeline: | |
| name: HBVouroboros testing | |
| runs-on: "ubuntu-latest" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: checkout repository | |
| uses: actions/checkout@v2 | |
| - name: initialize conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| - name: create conda environment | |
| run: | | |
| conda install -c conda-forge mamba | |
| mamba env create -f envs/environment.yml | |
| - name: activate environment and run pytest | |
| run: | | |
| mamba init | |
| # reload .bashrc config for current bash terminal | |
| source ~/.bashrc | |
| mamba activate HBVouroboros | |
| pytest -s |